(16 nodes) Heteromeric SMAD protein complex, and Domain of unknown function (DUF3480) network (Callithrix jacchus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAD3	Mothers against decapentaplegic homolog. (437 aa)
	SKI	SKI proto-oncogene. (729 aa)
	SMAD2	Mothers against decapentaplegic homolog. (494 aa)
	SMAD1	Mothers against decapentaplegic homolog. (469 aa)
	SMAD5	Mothers against decapentaplegic homolog. (465 aa)
	SKIL	SKI like proto-oncogene. (683 aa)
	ZFYVE16	Zinc finger FYVE domain-containing protein. (1539 aa)
	FOXH1	Forkhead box H1. (366 aa)
	ZFYVE9	Zinc finger FYVE domain-containing protein. (1425 aa)
	SMURF1	E3 ubiquitin-protein ligase. (757 aa)
	SMAD6	Mothers against decapentaplegic homolog. (498 aa)
	SMAD4	Mothers against decapentaplegic homolog. (552 aa)
	SMURF2	E3 ubiquitin-protein ligase. (748 aa)
	SMAD9	Mothers against decapentaplegic homolog. (467 aa)
	SMAD7	Mothers against decapentaplegic homolog. (426 aa)
	ENSCJAP00000069714	MH2 domain-containing protein. (253 aa)

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000069714	FOXH1	ENSCJAP00000069714	ENSCJAP00000039841	MH2 domain-containing protein.	Forkhead box H1.	0.890
ENSCJAP00000069714	SKI	ENSCJAP00000069714	ENSCJAP00000004499	MH2 domain-containing protein.	SKI proto-oncogene.	0.897
ENSCJAP00000069714	SKIL	ENSCJAP00000069714	ENSCJAP00000012163	MH2 domain-containing protein.	SKI like proto-oncogene.	0.880
ENSCJAP00000069714	SMAD1	ENSCJAP00000069714	ENSCJAP00000010974	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.577
ENSCJAP00000069714	SMAD3	ENSCJAP00000069714	ENSCJAP00000003797	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.936
ENSCJAP00000069714	SMAD4	ENSCJAP00000069714	ENSCJAP00000056533	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.940
ENSCJAP00000069714	SMAD5	ENSCJAP00000069714	ENSCJAP00000010980	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.587
ENSCJAP00000069714	SMAD6	ENSCJAP00000069714	ENSCJAP00000055473	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.442
ENSCJAP00000069714	SMAD7	ENSCJAP00000069714	ENSCJAP00000062049	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.523
ENSCJAP00000069714	SMAD9	ENSCJAP00000069714	ENSCJAP00000059242	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.642
ENSCJAP00000069714	SMURF1	ENSCJAP00000069714	ENSCJAP00000054273	MH2 domain-containing protein.	E3 ubiquitin-protein ligase.	0.787
ENSCJAP00000069714	SMURF2	ENSCJAP00000069714	ENSCJAP00000057420	MH2 domain-containing protein.	E3 ubiquitin-protein ligase.	0.917
ENSCJAP00000069714	ZFYVE16	ENSCJAP00000069714	ENSCJAP00000036395	MH2 domain-containing protein.	Zinc finger FYVE domain-containing protein.	0.698
ENSCJAP00000069714	ZFYVE9	ENSCJAP00000069714	ENSCJAP00000040203	MH2 domain-containing protein.	Zinc finger FYVE domain-containing protein.	0.924
FOXH1	ENSCJAP00000069714	ENSCJAP00000039841	ENSCJAP00000069714	Forkhead box H1.	MH2 domain-containing protein.	0.890
FOXH1	SMAD1	ENSCJAP00000039841	ENSCJAP00000010974	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.544
FOXH1	SMAD2	ENSCJAP00000039841	ENSCJAP00000008504	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.947
FOXH1	SMAD3	ENSCJAP00000039841	ENSCJAP00000003797	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.934
FOXH1	SMAD4	ENSCJAP00000039841	ENSCJAP00000056533	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.909
FOXH1	SMAD5	ENSCJAP00000039841	ENSCJAP00000010980	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.629