(5 nodes) MADS MEF2-like, and Histone deacetylase 4/5/7/9 network (Callithrix jacchus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MEF2D	Myocyte-specific enhancer factor 2D isoform 1. (521 aa)
	HDAC7	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (990 aa)
	MEF2B	Uncharacterized protein. (375 aa)
	ENSCJAP00000061225	Myocyte enhancer factor 2A. (501 aa)
	HDAC9	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1096 aa)

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000061225	HDAC7	ENSCJAP00000061225	ENSCJAP00000019002	Myocyte enhancer factor 2A.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.756
ENSCJAP00000061225	HDAC9	ENSCJAP00000061225	ENSCJAP00000068919	Myocyte enhancer factor 2A.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.686
ENSCJAP00000061225	MEF2B	ENSCJAP00000061225	ENSCJAP00000036751	Myocyte enhancer factor 2A.	Uncharacterized protein.	0.751
ENSCJAP00000061225	MEF2D	ENSCJAP00000061225	ENSCJAP00000010734	Myocyte enhancer factor 2A.	Myocyte-specific enhancer factor 2D isoform 1.	0.676
HDAC7	ENSCJAP00000061225	ENSCJAP00000019002	ENSCJAP00000061225	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Myocyte enhancer factor 2A.	0.756
HDAC7	MEF2D	ENSCJAP00000019002	ENSCJAP00000010734	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Myocyte-specific enhancer factor 2D isoform 1.	0.521
HDAC9	ENSCJAP00000061225	ENSCJAP00000068919	ENSCJAP00000061225	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Myocyte enhancer factor 2A.	0.686
HDAC9	MEF2B	ENSCJAP00000068919	ENSCJAP00000036751	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Uncharacterized protein.	0.963
HDAC9	MEF2D	ENSCJAP00000068919	ENSCJAP00000010734	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Myocyte-specific enhancer factor 2D isoform 1.	0.599
MEF2B	ENSCJAP00000061225	ENSCJAP00000036751	ENSCJAP00000061225	Uncharacterized protein.	Myocyte enhancer factor 2A.	0.751
MEF2B	HDAC9	ENSCJAP00000036751	ENSCJAP00000068919	Uncharacterized protein.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.963
MEF2B	MEF2D	ENSCJAP00000036751	ENSCJAP00000010734	Uncharacterized protein.	Myocyte-specific enhancer factor 2D isoform 1.	0.965
MEF2D	ENSCJAP00000061225	ENSCJAP00000010734	ENSCJAP00000061225	Myocyte-specific enhancer factor 2D isoform 1.	Myocyte enhancer factor 2A.	0.676
MEF2D	HDAC7	ENSCJAP00000010734	ENSCJAP00000019002	Myocyte-specific enhancer factor 2D isoform 1.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.521
MEF2D	HDAC9	ENSCJAP00000010734	ENSCJAP00000068919	Myocyte-specific enhancer factor 2D isoform 1.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.599
MEF2D	MEF2B	ENSCJAP00000010734	ENSCJAP00000036751	Myocyte-specific enhancer factor 2D isoform 1.	Uncharacterized protein.	0.965