STRINGSTRING
TAF1C TAF1C MED25 MED25 TAF8 TAF8 TAF7L TAF7L POLR3H POLR3H RRN3 RRN3 TAF2 TAF2 MED30 MED30 GTF3C1 GTF3C1 SMARCA4 SMARCA4 TAF1B TAF1B PNO1 PNO1 SNAPC5 SNAPC5 GTF2B GTF2B F7IST4_CALJA F7IST4_CALJA MED19 MED19 MED9 MED9 MED4 MED4 POLR2I POLR2I UBTF UBTF POLR1E POLR1E TFAM TFAM GTF2A1L GTF2A1L SMARCB1 SMARCB1 BAZ2A BAZ2A GTF2E2 GTF2E2 MED26 MED26 TAF10 TAF10 RSF1 RSF1 GTF2A2 GTF2A2 TCEB2 TCEB2 CDK7 CDK7 GTF2A1 GTF2A1 GCC1 GCC1 GTF3C5 GTF3C5 NCOA6 NCOA6 GTF3C4 GTF3C4 TAF5 TAF5 TBPL2 TBPL2 POLR2G POLR2G MED7 MED7 GTF2F2 GTF2F2 TAF9B TAF9B E2F3 E2F3 CDK9 CDK9 MED16 MED16 TBP TBP TAF3 TAF3 TAF4B TAF4B ELOA ELOA F7HQK1_CALJA F7HQK1_CALJA F7IQU3_CALJA F7IQU3_CALJA F7HV22_CALJA F7HV22_CALJA F6UM74_CALJA F6UM74_CALJA MED24 MED24 BDP1 BDP1 SMARCA5 SMARCA5 TAF6 TAF6 TFB2M TFB2M TAF11 TAF11 MED27 MED27 F7GDF1_CALJA F7GDF1_CALJA MED14 MED14 PPARGC1A PPARGC1A MED29 MED29 ENSCJAP00000052967 ENSCJAP00000052967 ENSCJAP00000053805 ENSCJAP00000053805 LOC100388427 LOC100388427 BRF1 BRF1 MED31-2 MED31-2 TAF6L TAF6L ENSCJAP00000054818 ENSCJAP00000054818 MAZ MAZ ENSCJAP00000055401 ENSCJAP00000055401 TAF12 TAF12 CCNH CCNH TAF7 TAF7 MED21 MED21 ENSCJAP00000058282 ENSCJAP00000058282 MED15 MED15 LOC100388427-2 LOC100388427-2 MED31 MED31 LOC100388427-3 LOC100388427-3 ENSCJAP00000063987 ENSCJAP00000063987 GTF2H5 GTF2H5 DR1 DR1 POLR2D POLR2D NAT14 NAT14 MED11 MED11 ENSCJAP00000067540 ENSCJAP00000067540 CRCP CRCP ENSCJAP00000067737 ENSCJAP00000067737 ENSCJAP00000068191 ENSCJAP00000068191 MED18 MED18 MED11-2 MED11-2 MED28 MED28 ENSCJAP00000069719 ENSCJAP00000069719 ENSCJAP00000070085 ENSCJAP00000070085 ENSCJAP00000070453 ENSCJAP00000070453 MED8 MED8 ENSCJAP00000070800 ENSCJAP00000070800 ENSCJAP00000071001 ENSCJAP00000071001 ENSCJAP00000071842 ENSCJAP00000071842 GTF2E1 GTF2E1 ENSCJAP00000073745 ENSCJAP00000073745 TCEB3C TCEB3C TAF1 TAF1 LOC100388427-4 LOC100388427-4 ENSCJAP00000074488 ENSCJAP00000074488 ENSCJAP00000075599 ENSCJAP00000075599 GTF2F1 GTF2F1 ENSCJAP00000075765 ENSCJAP00000075765 LOC100388427-5 LOC100388427-5 LOC100388427-6 LOC100388427-6 POLRMT POLRMT LOC100388427-7 LOC100388427-7 E2F2 E2F2 UBTFL1 UBTFL1 LOC100388427-8 LOC100388427-8 ENSCJAP00000076972 ENSCJAP00000076972 ENSCJAP00000077195 ENSCJAP00000077195 LOC100388427-9 LOC100388427-9 ERCC3 ERCC3 TAF4 TAF4 LOC100388427-10 LOC100388427-10 CAVIN1 CAVIN1 BRF1-2 BRF1-2 PIH1D1 PIH1D1 TWISTNB TWISTNB TAF13 TAF13 TBPL1 TBPL1 MED23 MED23
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TAF1CTATA box-binding protein-associated factor RNA polymerase I subunit C isoform 3. (843 aa)
MED25Mediator complex subunit 25. (880 aa)
TAF8Transcription initiation factor TFIID subunit 8. (310 aa)
TAF7LTATA-box binding protein associated factor 7 like. (496 aa)
POLR3HDNA-directed RNA polymerase III subunit RPC8 isoform a. (204 aa)
RRN3RNA polymerase I-specific transcription initiation factor RRN3. (651 aa)
TAF2TATA-box binding protein associated factor 2. (1323 aa)
MED30Mediator of RNA polymerase II transcription subunit 30. (178 aa)
GTF3C1General transcription factor IIIC subunit 1. (2102 aa)
SMARCA4SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4. (1669 aa)
TAF1BTATA-box binding protein associated factor, RNA polymerase I subunit B. (635 aa)
PNO1KH domain-containing protein. (252 aa)
SNAPC5Small nuclear RNA activating complex polypeptide 5. (98 aa)
GTF2BTranscription initiation factor IIB. (316 aa)
F7IST4_CALJATFIIS N-terminal domain-containing protein. (551 aa)
MED19Mediator of RNA polymerase II transcription subunit 19; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (261 aa)
MED9Mediator of RNA polymerase II transcription subunit 9; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (147 aa)
MED4Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (270 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
UBTFNucleolar transcription factor 1 isoform a. (764 aa)
POLR1EDNA-directed RNA polymerase I subunit RPA49. (419 aa)
TFAMTranscription factor A, mitochondrial. (247 aa)
GTF2A1LUncharacterized protein. (478 aa)
SMARCB1SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (409 aa)
BAZ2ABromodomain adjacent to zinc finger domain 2A. (1885 aa)
GTF2E2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (297 aa)
MED26Mediator of RNA polymerase II transcription subunit 26. (600 aa)
TAF10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (217 aa)
RSF1Remodeling and spacing factor 1. (1438 aa)
GTF2A2TFIIA_gamma_N domain-containing protein. (59 aa)
TCEB2Transcription elongation factor B polypeptide 2 isoform a. (118 aa)
CDK7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (346 aa)
GTF2A1Transcription initiation factor IIA subunit 1 isoform 1. (376 aa)
GCC1GRIP and coiled-coil domain-containing protein 1. (775 aa)
GTF3C5General transcription factor 3C polypeptide 5 isoform 2. (520 aa)
NCOA6Nuclear receptor coactivator 6 isoform 1. (2065 aa)
GTF3C4General transcription factor 3C polypeptide 4. (826 aa)
TAF5Transcription initiation factor TFIID subunit 5. (800 aa)
TBPL2TATA-box binding protein like 2. (371 aa)
POLR2GUncharacterized protein. (176 aa)
MED7Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. (233 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
TAF9BTATA-box binding protein associated factor 9b. (312 aa)
E2F3E2F transcription factor 3. (458 aa)
CDK9Cyclin dependent kinase 9; Belongs to the protein kinase superfamily. (487 aa)
MED16Mediator of RNA polymerase II transcription subunit 16; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (860 aa)
TBPTATA-box binding protein. (332 aa)
TAF3TATA-box binding protein associated factor 3. (931 aa)
TAF4BTATA-box binding protein associated factor 4b. (868 aa)
ELOAElongin A. (799 aa)
F7HQK1_CALJARPOL4c domain-containing protein. (142 aa)
F7IQU3_CALJAUbiquitin-like domain-containing protein. (128 aa)
F7HV22_CALJASkp1_POZ domain-containing protein; Belongs to the SKP1 family. (115 aa)
F6UM74_CALJAUncharacterized protein. (447 aa)
MED24Uncharacterized protein. (568 aa)
BDP1B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB. (2453 aa)
SMARCA5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1052 aa)
TAF6TATA-box binding protein associated factor 6. (713 aa)
TFB2MrRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (376 aa)
TAF11Transcription initiation factor TFIID subunit 11 isoform 1. (211 aa)
MED27Mediator complex subunit 27. (341 aa)
F7GDF1_CALJAUncharacterized protein. (64 aa)
MED14Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1454 aa)
PPARGC1APPARG coactivator 1 alpha. (802 aa)
MED29Mediator complex subunit 29. (220 aa)
ENSCJAP00000052967Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (112 aa)
ENSCJAP00000053805Uncharacterized protein. (124 aa)
LOC100388427Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
BRF1BRF1 RNA polymerase III transcription initiation factor subunit. (620 aa)
MED31-2Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (131 aa)
TAF6LTAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L. (622 aa)
ENSCJAP00000054818Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (112 aa)
MAZUncharacterized protein. (528 aa)
ENSCJAP00000055401Uncharacterized protein. (241 aa)
TAF12Transcription initiation factor TFIID subunit 12. (161 aa)
CCNHCyclin H; Belongs to the cyclin family. (325 aa)
TAF7Transcription initiation factor TFIID subunit 7. (349 aa)
MED21Mediator of RNA polymerase II transcription subunit 21; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (144 aa)
ENSCJAP00000058282Uncharacterized protein. (87 aa)
MED15Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (789 aa)
LOC100388427-2Histone H4. (103 aa)
MED31Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (131 aa)
LOC100388427-3Histone H4. (103 aa)
ENSCJAP00000063987Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (112 aa)
GTF2H5General transcription factor IIH subunit 5. (75 aa)
DR1Protein Dr1. (176 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (142 aa)
NAT14N-acetyltransferase 14 (putative). (206 aa)
MED11Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (117 aa)
ENSCJAP00000067540TAFII28 domain-containing protein. (203 aa)
CRCPCGRP receptor component. (153 aa)
ENSCJAP00000067737Uncharacterized protein. (236 aa)
ENSCJAP00000068191Uncharacterized protein. (182 aa)
MED18Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (208 aa)
MED11-2Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (196 aa)
MED28Mediator of RNA polymerase II transcription subunit 28. (178 aa)
ENSCJAP00000069719Uncharacterized protein. (194 aa)
ENSCJAP00000070085Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (125 aa)
ENSCJAP00000070453Uncharacterized protein. (466 aa)
MED8Mediator of RNA polymerase II transcription subunit 8; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (323 aa)
ENSCJAP00000070800TAFII28 domain-containing protein. (203 aa)
ENSCJAP00000071001Ubiquitin-like domain-containing protein. (127 aa)
ENSCJAP00000071842TAFII28 domain-containing protein. (203 aa)
GTF2E1General transcription factor IIE subunit 1. (464 aa)
ENSCJAP00000073745KH domain-containing protein. (253 aa)
TCEB3CTFIIS N-terminal domain-containing protein. (750 aa)
TAF1Transcription initiation factor TFIID subunit. (1927 aa)
LOC100388427-4Histone H4. (103 aa)
ENSCJAP00000074488Uncharacterized protein. (172 aa)
ENSCJAP00000075599Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (539 aa)
ENSCJAP00000075765Uncharacterized protein. (260 aa)
LOC100388427-5Histone H4. (103 aa)
LOC100388427-6Histone H4. (103 aa)
POLRMTDNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1317 aa)
LOC100388427-7Histone H4. (103 aa)
E2F2E2F transcription factor 2. (497 aa)
UBTFL1Upstream binding transcription factor like 1. (392 aa)
LOC100388427-8Histone H4. (103 aa)
ENSCJAP00000076972Uncharacterized protein; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (66 aa)
ENSCJAP00000077195TFIIF_beta domain-containing protein. (125 aa)
LOC100388427-9Histone H4. (103 aa)
ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit. (807 aa)
TAF4TATA-box binding protein associated factor 4. (1085 aa)
LOC100388427-10Histone H4. (103 aa)
CAVIN1Polymerase I and transcript release factor. (390 aa)
BRF1-2Uncharacterized protein. (173 aa)
PIH1D1PIH1 domain-containing protein 1. (290 aa)
TWISTNBTWIST neighbor. (342 aa)
TAF13Transcription initiation factor TFIID subunit 13. (124 aa)
TBPL1TATA box-binding protein-like protein 1. (186 aa)
MED23Mediator complex subunit 23. (1370 aa)
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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