28 items (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THRA	Thyroid hormone receptor alpha isoform 2. (490 aa)
	DRAP1	DR1 associated protein 1. (212 aa)
	DR1	Protein Dr1. (176 aa)
	BTAF1	B-TFIID TATA-box binding protein associated factor 1. (1860 aa)
	ENSCJAP00000070951	AAA domain-containing protein. (421 aa)
	TAF1	Transcription initiation factor TFIID subunit. (1927 aa)
	ENSCJAP00000054053	AAA domain-containing protein; Belongs to the AAA ATPase family. (455 aa)
	ENSCJAP00000075599	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
	BRF1-2	Uncharacterized protein. (173 aa)
	ENSCJAP00000075036	AAA domain-containing protein. (245 aa)
	CAND1	Cullin associated and neddylation dissociated 1. (1230 aa)
	RUVBL2	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (462 aa)
	YEATS2	YEATS domain containing 2. (1453 aa)
	ENSCJAP00000053805	Uncharacterized protein. (124 aa)
	PSMC5	26S protease regulatory subunit 8 isoform 1; Belongs to the AAA ATPase family. (406 aa)
	ESR1	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (595 aa)
	PSMC1	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (440 aa)
	GTF2A1	Transcription initiation factor IIA subunit 1 isoform 1. (376 aa)
	CAND2	Cullin associated and neddylation dissociated 2 (putative). (1236 aa)
	GTF2A2	TFIIA_gamma_N domain-containing protein. (59 aa)
	HHEX	Hematopoietically-expressed homeobox protein HHEX. (270 aa)
	BRF1	BRF1 RNA polymerase III transcription initiation factor subunit. (620 aa)
	GTF2B	Transcription initiation factor IIB. (316 aa)
	TAF1B	TATA-box binding protein associated factor, RNA polymerase I subunit B. (635 aa)
	RUVBL1	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
	TAF13	Transcription initiation factor TFIID subunit 13. (124 aa)
	F7HDR0_CALJA	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (453 aa)
	TAF12	Transcription initiation factor TFIID subunit 12. (161 aa)

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRF1	BRF1-2	ENSCJAP00000054353	ENSCJAP00000078525	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.855
BRF1	GTF2B	ENSCJAP00000054353	ENSCJAP00000013916	BRF1 RNA polymerase III transcription initiation factor subunit.	Transcription initiation factor IIB.	0.483
BRF1-2	BRF1	ENSCJAP00000078525	ENSCJAP00000054353	Uncharacterized protein.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.855
BRF1-2	GTF2B	ENSCJAP00000078525	ENSCJAP00000013916	Uncharacterized protein.	Transcription initiation factor IIB.	0.483
BTAF1	DR1	ENSCJAP00000065218	ENSCJAP00000064677	B-TFIID TATA-box binding protein associated factor 1.	Protein Dr1.	0.879
BTAF1	DRAP1	ENSCJAP00000065218	ENSCJAP00000061725	B-TFIID TATA-box binding protein associated factor 1.	DR1 associated protein 1.	0.919
BTAF1	GTF2B	ENSCJAP00000065218	ENSCJAP00000013916	B-TFIID TATA-box binding protein associated factor 1.	Transcription initiation factor IIB.	0.680
BTAF1	RUVBL1	ENSCJAP00000065218	ENSCJAP00000009783	B-TFIID TATA-box binding protein associated factor 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.425
BTAF1	TAF1	ENSCJAP00000065218	ENSCJAP00000074458	B-TFIID TATA-box binding protein associated factor 1.	Transcription initiation factor TFIID subunit.	0.611
BTAF1	TAF12	ENSCJAP00000065218	ENSCJAP00000056001	B-TFIID TATA-box binding protein associated factor 1.	Transcription initiation factor TFIID subunit 12.	0.800
DR1	BTAF1	ENSCJAP00000064677	ENSCJAP00000065218	Protein Dr1.	B-TFIID TATA-box binding protein associated factor 1.	0.879
DR1	DRAP1	ENSCJAP00000064677	ENSCJAP00000061725	Protein Dr1.	DR1 associated protein 1.	0.987
DR1	GTF2B	ENSCJAP00000064677	ENSCJAP00000013916	Protein Dr1.	Transcription initiation factor IIB.	0.592
DR1	YEATS2	ENSCJAP00000064677	ENSCJAP00000039538	Protein Dr1.	YEATS domain containing 2.	0.921
DRAP1	BTAF1	ENSCJAP00000061725	ENSCJAP00000065218	DR1 associated protein 1.	B-TFIID TATA-box binding protein associated factor 1.	0.919
DRAP1	DR1	ENSCJAP00000061725	ENSCJAP00000064677	DR1 associated protein 1.	Protein Dr1.	0.987
DRAP1	GTF2B	ENSCJAP00000061725	ENSCJAP00000013916	DR1 associated protein 1.	Transcription initiation factor IIB.	0.731
ENSCJAP00000053805	ENSCJAP00000075599	ENSCJAP00000053805	ENSCJAP00000075599	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.797
ENSCJAP00000053805	GTF2A1	ENSCJAP00000053805	ENSCJAP00000031602	Uncharacterized protein.	Transcription initiation factor IIA subunit 1 isoform 1.	0.766
ENSCJAP00000053805	GTF2A2	ENSCJAP00000053805	ENSCJAP00000028070	Uncharacterized protein.	TFIIA_gamma_N domain-containing protein.	0.797