42 items (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STAT3	Signal transducer and activator of transcription. (771 aa)
	ATF4	Activating transcription factor 4. (351 aa)
	TAF13	Transcription initiation factor TFIID subunit 13. (124 aa)
	THRB	Uncharacterized protein. (476 aa)
	TAF8	Transcription initiation factor TFIID subunit 8. (310 aa)
	TAF2	TATA-box binding protein associated factor 2. (1323 aa)
	NCOA1	Nuclear receptor coactivator. (1441 aa)
	ATF2	Cyclic AMP-dependent transcription factor ATF-2; Transcriptional activator which regulates the transcription of various genes, including those involved in anti-apoptosis, cell growth, and DNA damage response. Dependent on its binding partner, binds to CRE (cAMP response element) consensus sequences (5'-TGACGTCA- 3') or to AP-1 (activator protein 1) consensus sequences (5'-TGACTCA- 3'); Belongs to the bZIP family. (505 aa)
	MED1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1580 aa)
	NCBP1	Nuclear cap-binding protein subunit 1. (790 aa)
	SUPT6H	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1726 aa)
	RARA	Uncharacterized protein. (468 aa)
	ZIC3	Zinc finger protein ZIC 3. (467 aa)
	TAF10	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (217 aa)
	VDR	Vitamin D receptor. (427 aa)
	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0 isoform a. (355 aa)
	TFCP2	Alpha-globin transcription factor CP2 isoform 1. (502 aa)
	TAF5	Transcription initiation factor TFIID subunit 5. (800 aa)
	AP3B1	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1094 aa)
	TBP	TATA-box binding protein. (332 aa)
	TAF3	TATA-box binding protein associated factor 3. (931 aa)
	TAF4B	TATA-box binding protein associated factor 4b. (868 aa)
	C5AR1	Complement C5a receptor 1; Belongs to the G-protein coupled receptor 1 family. (347 aa)
	SREBF1	Sterol regulatory element binding transcription factor 1. (1178 aa)
	CREB1	Cyclic AMP-responsive element-binding protein 1 isoform B. (341 aa)
	TAF6	TATA-box binding protein associated factor 6. (713 aa)
	ZBTB1	Zinc finger and BTB domain containing 1. (644 aa)
	RXRA	Retinoid X receptor alpha. (492 aa)
	ENSCJAP00000053805	Uncharacterized protein. (124 aa)
	ENSCJAP00000053961	S_100 domain-containing protein; Belongs to the S-100 family. (97 aa)
	TAF12	Transcription initiation factor TFIID subunit 12. (161 aa)
	THRA	Thyroid hormone receptor alpha isoform 2. (490 aa)
	S100A10	Protein S100-A10; Belongs to the S-100 family. (97 aa)
	FOXE3	Forkhead box E3. (396 aa)
	ENSCJAP00000066205	S_100 domain-containing protein; Belongs to the S-100 family. (97 aa)
	ENSCJAP00000067858	S_100 domain-containing protein; Belongs to the S-100 family. (97 aa)
	HLTF	Helicase like transcription factor. (1021 aa)
	EPAS1	Endothelial PAS domain protein 1. (871 aa)
	NCOA2	Nuclear receptor coactivator. (1480 aa)
	NR1H3	Nuclear receptor subfamily 1 group H member 3. (466 aa)
	ENSCJAP00000075765	Uncharacterized protein. (260 aa)
	TAF4	TATA-box binding protein associated factor 4. (1085 aa)

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATF2	ATF4	ENSCJAP00000015097	ENSCJAP00000004703	Cyclic AMP-dependent transcription factor ATF-2; Transcriptional activator which regulates the transcription of various genes, including those involved in anti-apoptosis, cell growth, and DNA damage response. Dependent on its binding partner, binds to CRE (cAMP response element) consensus sequences (5'-TGACGTCA- 3') or to AP-1 (activator protein 1) consensus sequences (5'-TGACTCA- 3'); Belongs to the bZIP family.	Activating transcription factor 4.	0.940
ATF2	CREB1	ENSCJAP00000015097	ENSCJAP00000043931	Cyclic AMP-dependent transcription factor ATF-2; Transcriptional activator which regulates the transcription of various genes, including those involved in anti-apoptosis, cell growth, and DNA damage response. Dependent on its binding partner, binds to CRE (cAMP response element) consensus sequences (5'-TGACGTCA- 3') or to AP-1 (activator protein 1) consensus sequences (5'-TGACTCA- 3'); Belongs to the bZIP family.	Cyclic AMP-responsive element-binding protein 1 isoform B.	0.976
ATF2	STAT3	ENSCJAP00000015097	ENSCJAP00000000719	Cyclic AMP-dependent transcription factor ATF-2; Transcriptional activator which regulates the transcription of various genes, including those involved in anti-apoptosis, cell growth, and DNA damage response. Dependent on its binding partner, binds to CRE (cAMP response element) consensus sequences (5'-TGACGTCA- 3') or to AP-1 (activator protein 1) consensus sequences (5'-TGACTCA- 3'); Belongs to the bZIP family.	Signal transducer and activator of transcription.	0.558
ATF4	ATF2	ENSCJAP00000004703	ENSCJAP00000015097	Activating transcription factor 4.	Cyclic AMP-dependent transcription factor ATF-2; Transcriptional activator which regulates the transcription of various genes, including those involved in anti-apoptosis, cell growth, and DNA damage response. Dependent on its binding partner, binds to CRE (cAMP response element) consensus sequences (5'-TGACGTCA- 3') or to AP-1 (activator protein 1) consensus sequences (5'-TGACTCA- 3'); Belongs to the bZIP family.	0.940
ATF4	CREB1	ENSCJAP00000004703	ENSCJAP00000043931	Activating transcription factor 4.	Cyclic AMP-responsive element-binding protein 1 isoform B.	0.927
CREB1	ATF2	ENSCJAP00000043931	ENSCJAP00000015097	Cyclic AMP-responsive element-binding protein 1 isoform B.	Cyclic AMP-dependent transcription factor ATF-2; Transcriptional activator which regulates the transcription of various genes, including those involved in anti-apoptosis, cell growth, and DNA damage response. Dependent on its binding partner, binds to CRE (cAMP response element) consensus sequences (5'-TGACGTCA- 3') or to AP-1 (activator protein 1) consensus sequences (5'-TGACTCA- 3'); Belongs to the bZIP family.	0.976
CREB1	ATF4	ENSCJAP00000043931	ENSCJAP00000004703	Cyclic AMP-responsive element-binding protein 1 isoform B.	Activating transcription factor 4.	0.927
CREB1	STAT3	ENSCJAP00000043931	ENSCJAP00000000719	Cyclic AMP-responsive element-binding protein 1 isoform B.	Signal transducer and activator of transcription.	0.626
CREB1	TAF4	ENSCJAP00000043931	ENSCJAP00000078348	Cyclic AMP-responsive element-binding protein 1 isoform B.	TATA-box binding protein associated factor 4.	0.930
CREB1	TAF4B	ENSCJAP00000043931	ENSCJAP00000038544	Cyclic AMP-responsive element-binding protein 1 isoform B.	TATA-box binding protein associated factor 4b.	0.840
ENSCJAP00000053805	ENSCJAP00000075765	ENSCJAP00000053805	ENSCJAP00000075765	Uncharacterized protein.	Uncharacterized protein.	0.919
ENSCJAP00000053805	MED1	ENSCJAP00000053805	ENSCJAP00000015874	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.485
ENSCJAP00000053805	TAF10	ENSCJAP00000053805	ENSCJAP00000025656	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.963
ENSCJAP00000053805	TAF12	ENSCJAP00000053805	ENSCJAP00000056001	Uncharacterized protein.	Transcription initiation factor TFIID subunit 12.	0.963
ENSCJAP00000053805	TAF2	ENSCJAP00000053805	ENSCJAP00000010278	Uncharacterized protein.	TATA-box binding protein associated factor 2.	0.961
ENSCJAP00000053805	TAF3	ENSCJAP00000053805	ENSCJAP00000038390	Uncharacterized protein.	TATA-box binding protein associated factor 3.	0.942
ENSCJAP00000053805	TAF4	ENSCJAP00000053805	ENSCJAP00000078348	Uncharacterized protein.	TATA-box binding protein associated factor 4.	0.928
ENSCJAP00000053805	TAF4B	ENSCJAP00000053805	ENSCJAP00000038544	Uncharacterized protein.	TATA-box binding protein associated factor 4b.	0.919
ENSCJAP00000053805	TAF5	ENSCJAP00000053805	ENSCJAP00000033774	Uncharacterized protein.	Transcription initiation factor TFIID subunit 5.	0.917
ENSCJAP00000053805	TAF6	ENSCJAP00000053805	ENSCJAP00000046225	Uncharacterized protein.	TATA-box binding protein associated factor 6.	0.960