(13 nodes) HMG box domain binding network (Callithrix jacchus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HOXC4	Homeobox C4. (264 aa)
	OLIG2	Oligodendrocyte lineage transcription factor 2 (Predicted). (323 aa)
	TCF12	Transcription factor 12 isoform a. (705 aa)
	MEOX1	Mesenchyme homeobox 1. (267 aa)
	PAX6	Paired box 6. (472 aa)
	GATA3	GATA binding protein 3. (444 aa)
	SP1	Transcription factor Sp1 isoform a. (784 aa)
	PAX3	Uncharacterized protein. (484 aa)
	ALX4	ALX homeobox 4. (403 aa)
	EGR2	Early growth response 2. (486 aa)
	PRRX1	Paired related homeobox 1. (245 aa)
	HOXA3	Homeobox A3 isoform a (Predicted). (443 aa)
	DLX5	Distal-less homeobox 5. (289 aa)

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGR2	GATA3	ENSCJAP00000074500	ENSCJAP00000053176	Early growth response 2.	GATA binding protein 3.	0.564
EGR2	TCF12	ENSCJAP00000074500	ENSCJAP00000064085	Early growth response 2.	Transcription factor 12 isoform a.	0.508
GATA3	EGR2	ENSCJAP00000053176	ENSCJAP00000074500	GATA binding protein 3.	Early growth response 2.	0.564
GATA3	TCF12	ENSCJAP00000053176	ENSCJAP00000064085	GATA binding protein 3.	Transcription factor 12 isoform a.	0.559
OLIG2	PAX3	ENSCJAP00000058533	ENSCJAP00000022292	Oligodendrocyte lineage transcription factor 2 (Predicted).	Uncharacterized protein.	0.454
OLIG2	PAX6	ENSCJAP00000058533	ENSCJAP00000057969	Oligodendrocyte lineage transcription factor 2 (Predicted).	Paired box 6.	0.789
PAX3	OLIG2	ENSCJAP00000022292	ENSCJAP00000058533	Uncharacterized protein.	Oligodendrocyte lineage transcription factor 2 (Predicted).	0.454
PAX6	OLIG2	ENSCJAP00000057969	ENSCJAP00000058533	Paired box 6.	Oligodendrocyte lineage transcription factor 2 (Predicted).	0.789
TCF12	EGR2	ENSCJAP00000064085	ENSCJAP00000074500	Transcription factor 12 isoform a.	Early growth response 2.	0.508
TCF12	GATA3	ENSCJAP00000064085	ENSCJAP00000053176	Transcription factor 12 isoform a.	GATA binding protein 3.	0.559