(5 nodes) U2-type prespliceosome network (Callithrix jacchus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F7DGV5_CALJA	Small nuclear ribonucleoprotein-associated protein. (244 aa)
	SF3A1	Splicing factor 3A subunit 1 isoform 1. (793 aa)
	SNRNP70	Small nuclear ribonucleoprotein U1 subunit 70. (438 aa)
	ENSCJAP00000076431	Sm domain-containing protein. (62 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (235 aa)

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000076431	SF3A1	ENSCJAP00000076431	ENSCJAP00000019170	Sm domain-containing protein.	Splicing factor 3A subunit 1 isoform 1.	0.859
ENSCJAP00000076431	SNRNP70	ENSCJAP00000076431	ENSCJAP00000000338	Sm domain-containing protein.	Small nuclear ribonucleoprotein U1 subunit 70.	0.761
F7DGV5_CALJA	SF3A1	ENSCJAP00000006802	ENSCJAP00000019170	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3A subunit 1 isoform 1.	0.859
F7DGV5_CALJA	SNRNP70	ENSCJAP00000006802	ENSCJAP00000000338	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein U1 subunit 70.	0.761
SF3A1	ENSCJAP00000076431	ENSCJAP00000019170	ENSCJAP00000076431	Splicing factor 3A subunit 1 isoform 1.	Sm domain-containing protein.	0.859
SF3A1	F7DGV5_CALJA	ENSCJAP00000019170	ENSCJAP00000006802	Splicing factor 3A subunit 1 isoform 1.	Small nuclear ribonucleoprotein-associated protein.	0.859
SF3A1	SNRNP70	ENSCJAP00000019170	ENSCJAP00000000338	Splicing factor 3A subunit 1 isoform 1.	Small nuclear ribonucleoprotein U1 subunit 70.	0.615
SF3A1	SNRPN	ENSCJAP00000019170	ENSCJAP00000041630	Splicing factor 3A subunit 1 isoform 1.	Small nuclear ribonucleoprotein-associated protein.	0.859
SNRNP70	ENSCJAP00000076431	ENSCJAP00000000338	ENSCJAP00000076431	Small nuclear ribonucleoprotein U1 subunit 70.	Sm domain-containing protein.	0.761
SNRNP70	F7DGV5_CALJA	ENSCJAP00000000338	ENSCJAP00000006802	Small nuclear ribonucleoprotein U1 subunit 70.	Small nuclear ribonucleoprotein-associated protein.	0.761
SNRNP70	SF3A1	ENSCJAP00000000338	ENSCJAP00000019170	Small nuclear ribonucleoprotein U1 subunit 70.	Splicing factor 3A subunit 1 isoform 1.	0.615
SNRNP70	SNRPN	ENSCJAP00000000338	ENSCJAP00000041630	Small nuclear ribonucleoprotein U1 subunit 70.	Small nuclear ribonucleoprotein-associated protein.	0.761
SNRPN	SF3A1	ENSCJAP00000041630	ENSCJAP00000019170	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3A subunit 1 isoform 1.	0.859
SNRPN	SNRNP70	ENSCJAP00000041630	ENSCJAP00000000338	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein U1 subunit 70.	0.761