STRINGSTRING
PRKN PRKN SOX4 SOX4 PICK1 PICK1 KLF4 KLF4 SYNJ1 SYNJ1 SHH SHH POU5F1-2 POU5F1-2 NANOG NANOG SH3GL2 SH3GL2 FOXA2 FOXA2 GDNF GDNF MYC MYC EPS15 EPS15 SH3GL1 SH3GL1 POU5F1 POU5F1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRKNE3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (476 aa)
SOX4Transcription factor SOX. (472 aa)
PICK1Protein interacting with PRKCA 1. (448 aa)
KLF4Kruppel like factor 4. (507 aa)
SYNJ1Synaptojanin 1. (1610 aa)
SHHHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (477 aa)
POU5F1-2Uncharacterized protein. (146 aa)
NANOGHomeobox domain-containing protein. (305 aa)
SH3GL2SH3 domain containing GRB2 like 2, endophilin A1. (380 aa)
FOXA2Forkhead box A2. (456 aa)
GDNFGlial cell derived neurotrophic factor. (228 aa)
MYCMyc proto-oncogene protein; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. Binds to the VEGFA promoter, promoting VEGFA production and subsequent sprouting angiogenesis. Regulator of somatic reprogramming, controls self-renewal of embryonic stem cells. Functions with TAF6L to activate target gene expression through RNA polymerase II pause release (By similarity). (452 aa)
EPS15Epidermal growth factor receptor substrate 15 isoform A. (898 aa)
SH3GL1SH3 domain containing GRB2 like 1, endophilin A2. (368 aa)
POU5F1POU-specific domain-containing protein. (484 aa)
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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