STRINGSTRING
ASCL1 ASCL1 PXDN PXDN SDHA SDHA EMX2 EMX2 OLIG2 OLIG2 PAX6 PAX6 NEUROG1 NEUROG1 NEUROG2 NEUROG2 TBR1 TBR1 DLX2 DLX2 GLI3 GLI3 PXDNL PXDNL GSX2 GSX2 LHX6 LHX6 SHH SHH SOX2 SOX2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ASCL1Achaete-scute family bHLH transcription factor 1. (232 aa)
PXDNUncharacterized protein. (691 aa)
SDHASuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (664 aa)
EMX2Homeobox protein EMX2 isoform 1. (252 aa)
OLIG2Oligodendrocyte lineage transcription factor 2 (Predicted). (323 aa)
PAX6Paired box 6. (472 aa)
NEUROG1BHLH domain-containing protein. (129 aa)
NEUROG2Neurogenin 2. (272 aa)
TBR1T-box brain transcription factor 1. (682 aa)
DLX2Distal-less homeobox 2. (329 aa)
GLI3GLI family zinc finger 3. (1578 aa)
PXDNLPeroxidasin like. (1457 aa)
GSX2GS homeobox 2. (305 aa)
LHX6LIM homeobox 6. (515 aa)
SHHHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (477 aa)
SOX2Transcription factor SOX-2. (319 aa)
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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