(10 nodes) (2021) A Long-Term Conserved Satellite DNA That Remains Unexpanded in Several Genomes of Characiformes Fish Is Actively Transcribed. network (Callithrix jacchus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZNF106	Zinc finger protein 106. (1907 aa)
	RPL13A	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	PPFIA1	PTPRF interacting protein alpha 1. (1127 aa)
	MSH4	MutS homolog 4. (935 aa)
	COQ6	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6. (468 aa)
	RPL8	Ribosomal_L2_C domain-containing protein. (257 aa)
	ZDHHC22	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (263 aa)
	FOXL2	Forkhead box L2. (376 aa)
	RPL32	Uncharacterized protein. (135 aa)
	RPL32-2	Ribosomal protein L32. (135 aa)

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COQ6	MSH4	ENSCJAP00000037899	ENSCJAP00000012606	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	MutS homolog 4.	0.614
COQ6	PPFIA1	ENSCJAP00000037899	ENSCJAP00000001678	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	PTPRF interacting protein alpha 1.	0.782
COQ6	RPL13A	ENSCJAP00000037899	ENSCJAP00000000125	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.441
COQ6	RPL32	ENSCJAP00000037899	ENSCJAP00000061502	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	Uncharacterized protein.	0.588
COQ6	RPL32-2	ENSCJAP00000037899	ENSCJAP00000078509	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	Ribosomal protein L32.	0.588
COQ6	RPL8	ENSCJAP00000037899	ENSCJAP00000039802	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	Ribosomal_L2_C domain-containing protein.	0.556
COQ6	ZDHHC22	ENSCJAP00000037899	ENSCJAP00000057224	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.677
COQ6	ZNF106	ENSCJAP00000037899	ENSCJAP00000054173	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	Zinc finger protein 106.	0.790
FOXL2	MSH4	ENSCJAP00000057945	ENSCJAP00000012606	Forkhead box L2.	MutS homolog 4.	0.445
FOXL2	PPFIA1	ENSCJAP00000057945	ENSCJAP00000001678	Forkhead box L2.	PTPRF interacting protein alpha 1.	0.501
FOXL2	ZNF106	ENSCJAP00000057945	ENSCJAP00000054173	Forkhead box L2.	Zinc finger protein 106.	0.546
MSH4	COQ6	ENSCJAP00000012606	ENSCJAP00000037899	MutS homolog 4.	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	0.614
MSH4	FOXL2	ENSCJAP00000012606	ENSCJAP00000057945	MutS homolog 4.	Forkhead box L2.	0.445
MSH4	PPFIA1	ENSCJAP00000012606	ENSCJAP00000001678	MutS homolog 4.	PTPRF interacting protein alpha 1.	0.693
MSH4	RPL32	ENSCJAP00000012606	ENSCJAP00000061502	MutS homolog 4.	Uncharacterized protein.	0.494
MSH4	RPL32-2	ENSCJAP00000012606	ENSCJAP00000078509	MutS homolog 4.	Ribosomal protein L32.	0.494
MSH4	RPL8	ENSCJAP00000012606	ENSCJAP00000039802	MutS homolog 4.	Ribosomal_L2_C domain-containing protein.	0.477
MSH4	ZDHHC22	ENSCJAP00000012606	ENSCJAP00000057224	MutS homolog 4.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.591
MSH4	ZNF106	ENSCJAP00000012606	ENSCJAP00000054173	MutS homolog 4.	Zinc finger protein 106.	0.699
PPFIA1	COQ6	ENSCJAP00000001678	ENSCJAP00000037899	PTPRF interacting protein alpha 1.	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	0.782