STRINGSTRING
SHH SHH TBP TBP SOX2 SOX2 CDK5R1 CDK5R1 OLIG2 OLIG2 CACNG3 CACNG3 GRIK1 GRIK1 NNAT NNAT FSTL5 FSTL5 CNTNAP3 CNTNAP3 PXDN PXDN POU5F1 POU5F1 BDNF BDNF ATXN3L ATXN3L PLAGL1 PLAGL1 TBR1 TBR1 CASP3 CASP3 NES NES POU6F2 POU6F2 ZNF384 ZNF384 PXDNL PXDNL ATXN3 ATXN3 NANOG NANOG POU5F1-2 POU5F1-2 EBF2 EBF2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SHHHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (477 aa)
TBPTATA-box binding protein. (332 aa)
SOX2Transcription factor SOX-2. (319 aa)
CDK5R1Cyclin-dependent kinase 5 activator. (307 aa)
OLIG2Oligodendrocyte lineage transcription factor 2 (Predicted). (323 aa)
CACNG3Calcium voltage-gated channel auxiliary subunit gamma 3. (315 aa)
GRIK1Glutamate ionotropic receptor kainate type subunit 1. (949 aa)
NNATUncharacterized protein. (125 aa)
FSTL5Follistatin like 5. (850 aa)
CNTNAP3Uncharacterized protein. (1288 aa)
PXDNUncharacterized protein. (691 aa)
POU5F1POU-specific domain-containing protein. (484 aa)
BDNFBrain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS. (330 aa)
ATXN3LAtaxin 3 like. (353 aa)
PLAGL1Zinc finger protein PLAGL1 isoform 2. (463 aa)
TBR1T-box brain transcription factor 1. (682 aa)
CASP3Caspase 3; Belongs to the peptidase C14A family. (284 aa)
NESNestin; Belongs to the intermediate filament family. (1717 aa)
POU6F2POU domain protein. (738 aa)
ZNF384Zinc finger protein 384. (572 aa)
PXDNLPeroxidasin like. (1457 aa)
ATXN3Josephin domain-containing protein. (373 aa)
NANOGHomeobox domain-containing protein. (305 aa)
POU5F1-2Uncharacterized protein. (146 aa)
EBF2EBF transcription factor 2. (575 aa)
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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