(22 nodes) Mixed, incl. Glutamate and glutamine metabolism, and glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity network (Cebus capucinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALDH1B1	Aldehyde dehydrogenase 1 family member B1; Belongs to the aldehyde dehydrogenase family. (517 aa)
	ALDH16A1	Aldehyde dehydrogenase family 16 member A1. (802 aa)
	ALDH3A2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (508 aa)
	ALDH5A1	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (535 aa)
	GAD2	Glutamate decarboxylase 2. (585 aa)
	GLS2	ANK_REP_REGION domain-containing protein. (591 aa)
	ENSCCAP00000011724	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (493 aa)
	GLS	Glutaminase. (625 aa)
	GLUL	Glutamine synthetase. (374 aa)
	LOC108316462	Uncharacterized protein. (199 aa)
	GLUD1	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (558 aa)
	ENSCCAP00000018653	Uncharacterized protein. (198 aa)
	CNDP1	Carnosine dipeptidase 1. (506 aa)
	ALDH7A1	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (554 aa)
	CNDP2	Carnosine dipeptidase 2. (475 aa)
	GAD1	Glutamate decarboxylase 1. (594 aa)
	ABAT	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (500 aa)
	ALDH2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (517 aa)
	LOC108307638	EF-hand_14 domain-containing protein. (542 aa)
	L2HGDH	L-2-hydroxyglutarate dehydrogenase. (410 aa)
	ALDH9A1	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (457 aa)
	BBOX1	Gamma-butyrobetaine hydroxylase 1. (387 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABAT	ALDH16A1	ENSCCAP00000029887	ENSCCAP00000002081	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldehyde dehydrogenase family 16 member A1.	0.922
ABAT	ALDH1B1	ENSCCAP00000029887	ENSCCAP00000000886	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldehyde dehydrogenase 1 family member B1; Belongs to the aldehyde dehydrogenase family.	0.961
ABAT	ALDH2	ENSCCAP00000029887	ENSCCAP00000029958	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.961
ABAT	ALDH3A2	ENSCCAP00000029887	ENSCCAP00000002862	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.961
ABAT	ALDH5A1	ENSCCAP00000029887	ENSCCAP00000008721	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.986
ABAT	ALDH7A1	ENSCCAP00000029887	ENSCCAP00000026354	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.693
ABAT	ALDH9A1	ENSCCAP00000029887	ENSCCAP00000034155	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.961
ABAT	BBOX1	ENSCCAP00000029887	ENSCCAP00000037445	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Gamma-butyrobetaine hydroxylase 1.	0.511
ABAT	CNDP1	ENSCCAP00000029887	ENSCCAP00000023892	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Carnosine dipeptidase 1.	0.949
ABAT	CNDP2	ENSCCAP00000029887	ENSCCAP00000027236	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Carnosine dipeptidase 2.	0.949
ABAT	ENSCCAP00000011724	ENSCCAP00000029887	ENSCCAP00000011724	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.685
ABAT	GAD1	ENSCCAP00000029887	ENSCCAP00000028453	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase 1.	0.972
ABAT	GAD2	ENSCCAP00000029887	ENSCCAP00000009911	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase 2.	0.973
ABAT	GLUD1	ENSCCAP00000029887	ENSCCAP00000018006	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.685
ABAT	L2HGDH	ENSCCAP00000029887	ENSCCAP00000033120	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	L-2-hydroxyglutarate dehydrogenase.	0.511
ALDH16A1	ABAT	ENSCCAP00000002081	ENSCCAP00000029887	Aldehyde dehydrogenase family 16 member A1.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.922
ALDH16A1	ALDH1B1	ENSCCAP00000002081	ENSCCAP00000000886	Aldehyde dehydrogenase family 16 member A1.	Aldehyde dehydrogenase 1 family member B1; Belongs to the aldehyde dehydrogenase family.	0.894
ALDH16A1	ALDH2	ENSCCAP00000002081	ENSCCAP00000029958	Aldehyde dehydrogenase family 16 member A1.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.892
ALDH16A1	ALDH3A2	ENSCCAP00000002081	ENSCCAP00000002862	Aldehyde dehydrogenase family 16 member A1.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.915
ALDH16A1	ALDH5A1	ENSCCAP00000002081	ENSCCAP00000008721	Aldehyde dehydrogenase family 16 member A1.	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.438