12 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCCAP00000005023	Uncharacterized protein. (426 aa)
	GCN1	GCN1 activator of EIF2AK4. (2622 aa)
	DRG2	Developmentally regulated GTP binding protein 2. (364 aa)
	ABCF3	ATP binding cassette subfamily F member 3. (647 aa)
	RWDD1	RWD domain-containing protein. (243 aa)
	DRG1	OBG-type G domain-containing protein. (367 aa)
	LOC108309357	Uncharacterized protein. (348 aa)
	RWDD4	RWD domain containing 4. (188 aa)
	ENSCCAP00000029819	OBG-type G domain-containing protein. (319 aa)
	LOC108302142	OBG-type G domain-containing protein. (331 aa)
	ZC3H15	Uncharacterized protein. (426 aa)
	ENSCCAP00000036732	RWD domain-containing protein. (195 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCF3	DRG2	ENSCCAP00000020146	ENSCCAP00000010945	ATP binding cassette subfamily F member 3.	Developmentally regulated GTP binding protein 2.	0.430
ABCF3	ENSCCAP00000036732	ENSCCAP00000020146	ENSCCAP00000036732	ATP binding cassette subfamily F member 3.	RWD domain-containing protein.	0.478
ABCF3	GCN1	ENSCCAP00000020146	ENSCCAP00000006388	ATP binding cassette subfamily F member 3.	GCN1 activator of EIF2AK4.	0.979
ABCF3	LOC108309357	ENSCCAP00000020146	ENSCCAP00000023661	ATP binding cassette subfamily F member 3.	Uncharacterized protein.	0.430
ABCF3	RWDD1	ENSCCAP00000020146	ENSCCAP00000020213	ATP binding cassette subfamily F member 3.	RWD domain-containing protein.	0.478
DRG1	ENSCCAP00000005023	ENSCCAP00000023167	ENSCCAP00000005023	OBG-type G domain-containing protein.	Uncharacterized protein.	0.777
DRG1	ENSCCAP00000036732	ENSCCAP00000023167	ENSCCAP00000036732	OBG-type G domain-containing protein.	RWD domain-containing protein.	0.664
DRG1	GCN1	ENSCCAP00000023167	ENSCCAP00000006388	OBG-type G domain-containing protein.	GCN1 activator of EIF2AK4.	0.409
DRG1	LOC108309357	ENSCCAP00000023167	ENSCCAP00000023661	OBG-type G domain-containing protein.	Uncharacterized protein.	0.401
DRG1	RWDD1	ENSCCAP00000023167	ENSCCAP00000020213	OBG-type G domain-containing protein.	RWD domain-containing protein.	0.664
DRG1	RWDD4	ENSCCAP00000023167	ENSCCAP00000026511	OBG-type G domain-containing protein.	RWD domain containing 4.	0.593
DRG1	ZC3H15	ENSCCAP00000023167	ENSCCAP00000035548	OBG-type G domain-containing protein.	Uncharacterized protein.	0.777
DRG2	ABCF3	ENSCCAP00000010945	ENSCCAP00000020146	Developmentally regulated GTP binding protein 2.	ATP binding cassette subfamily F member 3.	0.430
DRG2	ENSCCAP00000005023	ENSCCAP00000010945	ENSCCAP00000005023	Developmentally regulated GTP binding protein 2.	Uncharacterized protein.	0.762
DRG2	ENSCCAP00000029819	ENSCCAP00000010945	ENSCCAP00000029819	Developmentally regulated GTP binding protein 2.	OBG-type G domain-containing protein.	0.401
DRG2	ENSCCAP00000036732	ENSCCAP00000010945	ENSCCAP00000036732	Developmentally regulated GTP binding protein 2.	RWD domain-containing protein.	0.887
DRG2	GCN1	ENSCCAP00000010945	ENSCCAP00000006388	Developmentally regulated GTP binding protein 2.	GCN1 activator of EIF2AK4.	0.896
DRG2	LOC108302142	ENSCCAP00000010945	ENSCCAP00000033773	Developmentally regulated GTP binding protein 2.	OBG-type G domain-containing protein.	0.401
DRG2	RWDD1	ENSCCAP00000010945	ENSCCAP00000020213	Developmentally regulated GTP binding protein 2.	RWD domain-containing protein.	0.887
DRG2	RWDD4	ENSCCAP00000010945	ENSCCAP00000026511	Developmentally regulated GTP binding protein 2.	RWD domain containing 4.	0.870