38 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TMC2	Transmembrane channel-like protein. (906 aa)
	CIB1	Calcium and integrin binding 1. (205 aa)
	CLIC2	Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (247 aa)
	CLRN1	Clarin 1. (245 aa)
	LOC108282682	Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (241 aa)
	MYO7B	Myosin VIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2116 aa)
	CLIC5	Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (409 aa)
	SRRM4	Serine/arginine repetitive matrix 4. (609 aa)
	USH2A	Usherin. (5202 aa)
	CLIC4	Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (253 aa)
	CLCA2	Chloride channel accessory 2. (942 aa)
	ENSCCAP00000010551	Uncharacterized protein. (150 aa)
	WFS1	Wolframin ER transmembrane glycoprotein. (890 aa)
	CIB2	Uncharacterized protein. (187 aa)
	TPRN	Taperin. (704 aa)
	LHFPL5	LHFPL tetraspan subfamily member 5. (277 aa)
	LOC108296347	Uncharacterized protein. (399 aa)
	CDH23	Cadherin related 23. (3359 aa)
	OTOF	Otoferlin. (1996 aa)
	STOX1	Storkhead box 1. (988 aa)
	CDHR5	Cadherin related family member 5. (808 aa)
	SLC26A5	Prestin; Motor protein that converts auditory stimuli to length changes in outer hair cells and mediates sound amplification in the mammalian hearing organ; Belongs to the SLC26A/SulP transporter (TC 2.A.53) family. (744 aa)
	USH1G	USH1 protein network component sans. (461 aa)
	USH1C	USH1 protein network component harmonin. (899 aa)
	AADACL2	Arylacetamide deacetylase like 2. (401 aa)
	ANKS4B	Ankyrin repeat and sterile alpha motif domain containing 4B. (417 aa)
	TMIE	Transmembrane inner ear. (154 aa)
	PCDH15	Protocadherin related 15. (1958 aa)
	COL10A1	Collagen type X alpha 1 chain. (680 aa)
	CDHR2	Cadherin related family member 2. (1310 aa)
	ADGRV1	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (6306 aa)
	ATP8A2	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1188 aa)
	TMC1	Transmembrane channel-like protein. (761 aa)
	FER1L6	Fer-1 like family member 6. (1834 aa)
	MYO7A	Myosin VIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2166 aa)
	CIB3	Calcium and integrin binding family member 3. (187 aa)
	CLIC6	Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (688 aa)
	ENSCCAP00000038863	Uncharacterized protein. (483 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AADACL2	ADGRV1	ENSCCAP00000026133	ENSCCAP00000032278	Arylacetamide deacetylase like 2.	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	0.696
AADACL2	ATP8A2	ENSCCAP00000026133	ENSCCAP00000032568	Arylacetamide deacetylase like 2.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.650
AADACL2	CDH23	ENSCCAP00000026133	ENSCCAP00000014921	Arylacetamide deacetylase like 2.	Cadherin related 23.	0.802
AADACL2	CLCA2	ENSCCAP00000026133	ENSCCAP00000010469	Arylacetamide deacetylase like 2.	Chloride channel accessory 2.	0.726
AADACL2	CLIC5	ENSCCAP00000026133	ENSCCAP00000007317	Arylacetamide deacetylase like 2.	Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.	0.819
AADACL2	COL10A1	ENSCCAP00000026133	ENSCCAP00000029392	Arylacetamide deacetylase like 2.	Collagen type X alpha 1 chain.	0.707
AADACL2	ENSCCAP00000038863	ENSCCAP00000026133	ENSCCAP00000038863	Arylacetamide deacetylase like 2.	Uncharacterized protein.	0.628
AADACL2	LOC108296347	ENSCCAP00000026133	ENSCCAP00000012668	Arylacetamide deacetylase like 2.	Uncharacterized protein.	0.628
AADACL2	MYO7A	ENSCCAP00000026133	ENSCCAP00000035931	Arylacetamide deacetylase like 2.	Myosin VIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.628
AADACL2	OTOF	ENSCCAP00000026133	ENSCCAP00000020172	Arylacetamide deacetylase like 2.	Otoferlin.	0.752
AADACL2	PCDH15	ENSCCAP00000026133	ENSCCAP00000028624	Arylacetamide deacetylase like 2.	Protocadherin related 15.	0.437
AADACL2	SLC26A5	ENSCCAP00000026133	ENSCCAP00000024317	Arylacetamide deacetylase like 2.	Prestin; Motor protein that converts auditory stimuli to length changes in outer hair cells and mediates sound amplification in the mammalian hearing organ; Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.	0.633
AADACL2	SRRM4	ENSCCAP00000026133	ENSCCAP00000009491	Arylacetamide deacetylase like 2.	Serine/arginine repetitive matrix 4.	0.733
AADACL2	STOX1	ENSCCAP00000026133	ENSCCAP00000020490	Arylacetamide deacetylase like 2.	Storkhead box 1.	0.689
AADACL2	TMC1	ENSCCAP00000026133	ENSCCAP00000033353	Arylacetamide deacetylase like 2.	Transmembrane channel-like protein.	0.780
AADACL2	USH2A	ENSCCAP00000026133	ENSCCAP00000010078	Arylacetamide deacetylase like 2.	Usherin.	0.530
AADACL2	WFS1	ENSCCAP00000026133	ENSCCAP00000010667	Arylacetamide deacetylase like 2.	Wolframin ER transmembrane glycoprotein.	0.763
ADGRV1	AADACL2	ENSCCAP00000032278	ENSCCAP00000026133	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Arylacetamide deacetylase like 2.	0.696
ADGRV1	ATP8A2	ENSCCAP00000032278	ENSCCAP00000032568	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.741
ADGRV1	CDH23	ENSCCAP00000032278	ENSCCAP00000014921	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Cadherin related 23.	0.815