20 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CXorf21	Chromosome X open reading frame 21. (298 aa)
	THAP2	THAP-type domain-containing protein. (228 aa)
	ENSCCAP00000003732	THAP-type domain-containing protein. (228 aa)
	ARMCX3	Arm_2 domain-containing protein. (379 aa)
	ZNF184	Zinc finger protein 184. (751 aa)
	C15orf48	Chromosome 15 open reading frame 48. (83 aa)
	LRRC19	Leucine rich repeat containing 19. (370 aa)
	P2RY10	P2Y receptor family member 10. (359 aa)
	ENSCCAP00000015531	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (323 aa)
	CCDC191	Coiled-coil domain containing 191. (938 aa)
	ENSCCAP00000019430	Uncharacterized protein. (239 aa)
	ERICH6	Glutamate rich 6. (663 aa)
	MYO19	Myosin XIX; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (946 aa)
	GPR174	G protein-coupled receptor 174. (333 aa)
	ARMCX1	Armadillo repeat containing X-linked 1. (453 aa)
	TCEAL1	Transcription elongation factor A like 1. (159 aa)
	ARL10	ADP ribosylation factor like GTPase 10. (246 aa)
	PHF7	PHD finger protein 7. (382 aa)
	ARMC10	Armadillo repeat containing 10. (342 aa)
	USP11	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (972 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMCX1	TCEAL1	ENSCCAP00000028106	ENSCCAP00000028193	Armadillo repeat containing X-linked 1.	Transcription elongation factor A like 1.	0.552
ARMCX3	LRRC19	ENSCCAP00000004455	ENSCCAP00000014620	Arm_2 domain-containing protein.	Leucine rich repeat containing 19.	0.400
ARMCX3	TCEAL1	ENSCCAP00000004455	ENSCCAP00000028193	Arm_2 domain-containing protein.	Transcription elongation factor A like 1.	0.553
C15orf48	CXorf21	ENSCCAP00000010068	ENSCCAP00000001300	Chromosome 15 open reading frame 48.	Chromosome X open reading frame 21.	0.446
CXorf21	C15orf48	ENSCCAP00000001300	ENSCCAP00000010068	Chromosome X open reading frame 21.	Chromosome 15 open reading frame 48.	0.446
ENSCCAP00000019430	ERICH6	ENSCCAP00000019430	ENSCCAP00000022066	Uncharacterized protein.	Glutamate rich 6.	0.469
ERICH6	ENSCCAP00000019430	ENSCCAP00000022066	ENSCCAP00000019430	Glutamate rich 6.	Uncharacterized protein.	0.469
LRRC19	ARMCX3	ENSCCAP00000014620	ENSCCAP00000004455	Leucine rich repeat containing 19.	Arm_2 domain-containing protein.	0.400
MYO19	PHF7	ENSCCAP00000023303	ENSCCAP00000029870	Myosin XIX; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	PHD finger protein 7.	0.639
PHF7	MYO19	ENSCCAP00000029870	ENSCCAP00000023303	PHD finger protein 7.	Myosin XIX; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.639
PHF7	TCEAL1	ENSCCAP00000029870	ENSCCAP00000028193	PHD finger protein 7.	Transcription elongation factor A like 1.	0.475
PHF7	USP11	ENSCCAP00000029870	ENSCCAP00000032540	PHD finger protein 7.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.433
TCEAL1	ARMCX1	ENSCCAP00000028193	ENSCCAP00000028106	Transcription elongation factor A like 1.	Armadillo repeat containing X-linked 1.	0.552
TCEAL1	ARMCX3	ENSCCAP00000028193	ENSCCAP00000004455	Transcription elongation factor A like 1.	Arm_2 domain-containing protein.	0.553
TCEAL1	PHF7	ENSCCAP00000028193	ENSCCAP00000029870	Transcription elongation factor A like 1.	PHD finger protein 7.	0.475
TCEAL1	USP11	ENSCCAP00000028193	ENSCCAP00000032540	Transcription elongation factor A like 1.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.664
USP11	PHF7	ENSCCAP00000032540	ENSCCAP00000029870	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	PHD finger protein 7.	0.433
USP11	TCEAL1	ENSCCAP00000032540	ENSCCAP00000028193	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	Transcription elongation factor A like 1.	0.664