8 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LIN54	Lin-54 DREAM MuvB core complex component. (749 aa)
	ENSCCAP00000007600	RRM domain-containing protein. (163 aa)
	HMGA1	High mobility group AT-hook 1. (107 aa)
	HNRNPD	Heterogeneous nuclear ribonucleoprotein D. (355 aa)
	HMGA2	Uncharacterized protein. (118 aa)
	HAND2	Heart and neural crest derivatives expressed 2. (217 aa)
	MEF2C	Myocyte enhancer factor 2C. (483 aa)
	ENSCCAP00000005370	Uncharacterized protein. (97 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCCAP00000005370	HMGA2	ENSCCAP00000005370	ENSCCAP00000014501	Uncharacterized protein.	Uncharacterized protein.	0.595
HAND2	MEF2C	ENSCCAP00000020234	ENSCCAP00000003699	Heart and neural crest derivatives expressed 2.	Myocyte enhancer factor 2C.	0.647
HMGA1	HMGA2	ENSCCAP00000013031	ENSCCAP00000014501	High mobility group AT-hook 1.	Uncharacterized protein.	0.595
HMGA2	ENSCCAP00000005370	ENSCCAP00000014501	ENSCCAP00000005370	Uncharacterized protein.	Uncharacterized protein.	0.595
HMGA2	HMGA1	ENSCCAP00000014501	ENSCCAP00000013031	Uncharacterized protein.	High mobility group AT-hook 1.	0.595
MEF2C	HAND2	ENSCCAP00000003699	ENSCCAP00000020234	Myocyte enhancer factor 2C.	Heart and neural crest derivatives expressed 2.	0.647