(29 nodes) TBP-class protein binding network (Cebus capucinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108311883	AAA domain-containing protein. (492 aa)
	ENSCCAP00000000291	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (91 aa)
	TAF13	TATA-box binding protein associated factor 13. (124 aa)
	BRF1	BRF1 RNA polymerase III transcription initiation factor subunit. (677 aa)
	CAND1	Cullin associated and neddylation dissociated 1. (1230 aa)
	PSMC5	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (382 aa)
	ENSCCAP00000013688	Uncharacterized protein. (54 aa)
	GTF2B	General transcription factor IIB. (316 aa)
	RUVBL2	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (468 aa)
	ENSCCAP00000015305	AAA domain-containing protein; Belongs to the AAA ATPase family. (228 aa)
	ENSCCAP00000017342	TFIIA_gamma_N domain-containing protein. (81 aa)
	TAF1	Transcription initiation factor TFIID subunit. (1927 aa)
	GTF2A2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	BTAF1	B-TFIID TATA-box binding protein associated factor 1. (1849 aa)
	BRF2	BRF2 RNA polymerase III transcription initiation factor subunit. (347 aa)
	LOC108313792	AAA domain-containing protein. (368 aa)
	ENSCCAP00000024134	Uncharacterized protein. (120 aa)
	DR1	Down-regulator of transcription 1. (176 aa)
	ENSCCAP00000024872	AAA domain-containing protein. (386 aa)
	RUVBL1	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
	ESR1	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (595 aa)
	YEATS2	YEATS domain containing 2. (1422 aa)
	CAND2	Cullin associated and neddylation dissociated 2 (putative). (1236 aa)
	GTF2A1	General transcription factor IIA subunit 1. (376 aa)
	HHEX	Homeobox domain-containing protein. (290 aa)
	THRA	Thyroid hormone receptor alpha. (490 aa)
	ENSCCAP00000033532	Uncharacterized protein. (381 aa)
	TAF12	TATA-box binding protein associated factor 12. (213 aa)
	DRAP1	DR1 associated protein 1. (205 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRF1	BRF2	ENSCCAP00000007559	ENSCCAP00000022394	BRF1 RNA polymerase III transcription initiation factor subunit.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.578
BRF1	BTAF1	ENSCCAP00000007559	ENSCCAP00000019353	BRF1 RNA polymerase III transcription initiation factor subunit.	B-TFIID TATA-box binding protein associated factor 1.	0.403
BRF1	GTF2B	ENSCCAP00000007559	ENSCCAP00000014621	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIB.	0.552
BRF2	BRF1	ENSCCAP00000022394	ENSCCAP00000007559	BRF2 RNA polymerase III transcription initiation factor subunit.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.578
BRF2	GTF2B	ENSCCAP00000022394	ENSCCAP00000014621	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIB.	0.461
BTAF1	BRF1	ENSCCAP00000019353	ENSCCAP00000007559	B-TFIID TATA-box binding protein associated factor 1.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.403
BTAF1	DR1	ENSCCAP00000019353	ENSCCAP00000024456	B-TFIID TATA-box binding protein associated factor 1.	Down-regulator of transcription 1.	0.907
BTAF1	DRAP1	ENSCCAP00000019353	ENSCCAP00000039953	B-TFIID TATA-box binding protein associated factor 1.	DR1 associated protein 1.	0.938
BTAF1	GTF2B	ENSCCAP00000019353	ENSCCAP00000014621	B-TFIID TATA-box binding protein associated factor 1.	General transcription factor IIB.	0.613
BTAF1	RUVBL1	ENSCCAP00000019353	ENSCCAP00000025533	B-TFIID TATA-box binding protein associated factor 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.403
BTAF1	TAF1	ENSCCAP00000019353	ENSCCAP00000019016	B-TFIID TATA-box binding protein associated factor 1.	Transcription initiation factor TFIID subunit.	0.580
BTAF1	TAF12	ENSCCAP00000019353	ENSCCAP00000039018	B-TFIID TATA-box binding protein associated factor 1.	TATA-box binding protein associated factor 12.	0.691
DR1	BTAF1	ENSCCAP00000024456	ENSCCAP00000019353	Down-regulator of transcription 1.	B-TFIID TATA-box binding protein associated factor 1.	0.907
DR1	DRAP1	ENSCCAP00000024456	ENSCCAP00000039953	Down-regulator of transcription 1.	DR1 associated protein 1.	0.982
DR1	GTF2B	ENSCCAP00000024456	ENSCCAP00000014621	Down-regulator of transcription 1.	General transcription factor IIB.	0.567
DR1	TAF12	ENSCCAP00000024456	ENSCCAP00000039018	Down-regulator of transcription 1.	TATA-box binding protein associated factor 12.	0.422
DR1	YEATS2	ENSCCAP00000024456	ENSCCAP00000026506	Down-regulator of transcription 1.	YEATS domain containing 2.	0.964
DRAP1	BTAF1	ENSCCAP00000039953	ENSCCAP00000019353	DR1 associated protein 1.	B-TFIID TATA-box binding protein associated factor 1.	0.938
DRAP1	DR1	ENSCCAP00000039953	ENSCCAP00000024456	DR1 associated protein 1.	Down-regulator of transcription 1.	0.982
DRAP1	GTF2B	ENSCCAP00000039953	ENSCCAP00000014621	DR1 associated protein 1.	General transcription factor IIB.	0.680