15 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MED25	Uncharacterized protein. (796 aa)
	ENSCCAP00000015709	Uncharacterized protein. (643 aa)
	NCOR2	Nuclear receptor corepressor 2. (2513 aa)
	RARG	Retinoic acid receptor gamma. (456 aa)
	NR0B2	Nuclear receptor subfamily 0 group B member 2. (257 aa)
	ARID5A	AT-rich interaction domain 5A. (594 aa)
	NSD1	Nuclear receptor binding SET domain protein 1. (2593 aa)
	TACC1	Transforming acidic coiled-coil containing protein 1. (611 aa)
	VDR	Vitamin D receptor. (427 aa)
	HMGA1	High mobility group AT-hook 1. (107 aa)
	NR1H4	Nuclear receptor subfamily 1 group H member 4. (486 aa)
	NR1H2	Nuclear receptor subfamily 1 group H member 2. (459 aa)
	ENSCCAP00000005370	Uncharacterized protein. (97 aa)
	NRIP1	Nuclear receptor interacting protein 1. (1158 aa)
	NCOA6	Nuclear receptor coactivator 6. (2057 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCOA6	NCOR2	ENSCCAP00000002057	ENSCCAP00000018156	Nuclear receptor coactivator 6.	Nuclear receptor corepressor 2.	0.593
NCOR2	NCOA6	ENSCCAP00000018156	ENSCCAP00000002057	Nuclear receptor corepressor 2.	Nuclear receptor coactivator 6.	0.593
NCOR2	NR0B2	ENSCCAP00000018156	ENSCCAP00000025696	Nuclear receptor corepressor 2.	Nuclear receptor subfamily 0 group B member 2.	0.611
NCOR2	NR1H2	ENSCCAP00000018156	ENSCCAP00000005714	Nuclear receptor corepressor 2.	Nuclear receptor subfamily 1 group H member 2.	0.832
NCOR2	NR1H4	ENSCCAP00000018156	ENSCCAP00000006640	Nuclear receptor corepressor 2.	Nuclear receptor subfamily 1 group H member 4.	0.832
NCOR2	NRIP1	ENSCCAP00000018156	ENSCCAP00000003192	Nuclear receptor corepressor 2.	Nuclear receptor interacting protein 1.	0.415
NCOR2	RARG	ENSCCAP00000018156	ENSCCAP00000020184	Nuclear receptor corepressor 2.	Retinoic acid receptor gamma.	0.691
NCOR2	VDR	ENSCCAP00000018156	ENSCCAP00000038645	Nuclear receptor corepressor 2.	Vitamin D receptor.	0.727
NR0B2	NCOR2	ENSCCAP00000025696	ENSCCAP00000018156	Nuclear receptor subfamily 0 group B member 2.	Nuclear receptor corepressor 2.	0.611
NR0B2	NR1H2	ENSCCAP00000025696	ENSCCAP00000005714	Nuclear receptor subfamily 0 group B member 2.	Nuclear receptor subfamily 1 group H member 2.	0.492
NR0B2	NR1H4	ENSCCAP00000025696	ENSCCAP00000006640	Nuclear receptor subfamily 0 group B member 2.	Nuclear receptor subfamily 1 group H member 4.	0.718
NR0B2	VDR	ENSCCAP00000025696	ENSCCAP00000038645	Nuclear receptor subfamily 0 group B member 2.	Vitamin D receptor.	0.410
NR1H2	NCOR2	ENSCCAP00000005714	ENSCCAP00000018156	Nuclear receptor subfamily 1 group H member 2.	Nuclear receptor corepressor 2.	0.832
NR1H2	NR0B2	ENSCCAP00000005714	ENSCCAP00000025696	Nuclear receptor subfamily 1 group H member 2.	Nuclear receptor subfamily 0 group B member 2.	0.492
NR1H2	NR1H4	ENSCCAP00000005714	ENSCCAP00000006640	Nuclear receptor subfamily 1 group H member 2.	Nuclear receptor subfamily 1 group H member 4.	0.441
NR1H2	NRIP1	ENSCCAP00000005714	ENSCCAP00000003192	Nuclear receptor subfamily 1 group H member 2.	Nuclear receptor interacting protein 1.	0.405
NR1H4	NCOR2	ENSCCAP00000006640	ENSCCAP00000018156	Nuclear receptor subfamily 1 group H member 4.	Nuclear receptor corepressor 2.	0.832
NR1H4	NR0B2	ENSCCAP00000006640	ENSCCAP00000025696	Nuclear receptor subfamily 1 group H member 4.	Nuclear receptor subfamily 0 group B member 2.	0.718
NR1H4	NR1H2	ENSCCAP00000006640	ENSCCAP00000005714	Nuclear receptor subfamily 1 group H member 4.	Nuclear receptor subfamily 1 group H member 2.	0.441
NRIP1	NCOR2	ENSCCAP00000003192	ENSCCAP00000018156	Nuclear receptor interacting protein 1.	Nuclear receptor corepressor 2.	0.415