13 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TM9SF1	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (815 aa)
	LOC108284318	Uncharacterized protein. (194 aa)
	CHMP2B	Charged multivesicular body protein 2B. (215 aa)
	CHMP4C	Charged multivesicular body protein 4C. (233 aa)
	ENSCCAP00000018340	Uncharacterized protein. (166 aa)
	CHMP6	Charged multivesicular body protein 6. (201 aa)
	LOC108310005	Uncharacterized protein. (221 aa)
	MDP1	Magnesium dependent phosphatase 1. (164 aa)
	CHMP7	Charged multivesicular body protein 7. (453 aa)
	CHMP2A	Charged multivesicular body protein 2A. (222 aa)
	CHMP4B	Charged multivesicular body protein 4B. (224 aa)
	CHMP1A	Charged multivesicular body protein 1A. (331 aa)
	LOC108289158	Uncharacterized protein. (285 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHMP1A	CHMP2A	ENSCCAP00000035245	ENSCCAP00000033976	Charged multivesicular body protein 1A.	Charged multivesicular body protein 2A.	0.994
CHMP1A	CHMP2B	ENSCCAP00000035245	ENSCCAP00000004442	Charged multivesicular body protein 1A.	Charged multivesicular body protein 2B.	0.954
CHMP1A	CHMP4B	ENSCCAP00000035245	ENSCCAP00000034980	Charged multivesicular body protein 1A.	Charged multivesicular body protein 4B.	0.986
CHMP1A	CHMP4C	ENSCCAP00000035245	ENSCCAP00000015056	Charged multivesicular body protein 1A.	Charged multivesicular body protein 4C.	0.979
CHMP1A	CHMP6	ENSCCAP00000035245	ENSCCAP00000026463	Charged multivesicular body protein 1A.	Charged multivesicular body protein 6.	0.974
CHMP1A	CHMP7	ENSCCAP00000035245	ENSCCAP00000020506	Charged multivesicular body protein 1A.	Charged multivesicular body protein 7.	0.963
CHMP1A	LOC108284318	ENSCCAP00000035245	ENSCCAP00000000993	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.971
CHMP1A	LOC108310005	ENSCCAP00000035245	ENSCCAP00000018559	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.983
CHMP1A	MDP1	ENSCCAP00000035245	ENSCCAP00000018752	Charged multivesicular body protein 1A.	Magnesium dependent phosphatase 1.	0.673
CHMP1A	TM9SF1	ENSCCAP00000035245	ENSCCAP00000028363	Charged multivesicular body protein 1A.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.865
CHMP2A	CHMP1A	ENSCCAP00000033976	ENSCCAP00000035245	Charged multivesicular body protein 2A.	Charged multivesicular body protein 1A.	0.994
CHMP2A	CHMP2B	ENSCCAP00000033976	ENSCCAP00000004442	Charged multivesicular body protein 2A.	Charged multivesicular body protein 2B.	0.978
CHMP2A	CHMP4B	ENSCCAP00000033976	ENSCCAP00000034980	Charged multivesicular body protein 2A.	Charged multivesicular body protein 4B.	0.993
CHMP2A	CHMP4C	ENSCCAP00000033976	ENSCCAP00000015056	Charged multivesicular body protein 2A.	Charged multivesicular body protein 4C.	0.990
CHMP2A	CHMP6	ENSCCAP00000033976	ENSCCAP00000026463	Charged multivesicular body protein 2A.	Charged multivesicular body protein 6.	0.993
CHMP2A	CHMP7	ENSCCAP00000033976	ENSCCAP00000020506	Charged multivesicular body protein 2A.	Charged multivesicular body protein 7.	0.975
CHMP2A	ENSCCAP00000018340	ENSCCAP00000033976	ENSCCAP00000018340	Charged multivesicular body protein 2A.	Uncharacterized protein.	0.991
CHMP2A	LOC108284318	ENSCCAP00000033976	ENSCCAP00000000993	Charged multivesicular body protein 2A.	Uncharacterized protein.	0.991
CHMP2A	LOC108310005	ENSCCAP00000033976	ENSCCAP00000018559	Charged multivesicular body protein 2A.	Uncharacterized protein.	0.994
CHMP2A	MDP1	ENSCCAP00000033976	ENSCCAP00000018752	Charged multivesicular body protein 2A.	Magnesium dependent phosphatase 1.	0.850