7 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRCAP	Uncharacterized protein. (3217 aa)
	ENSCCAP00000005370	Uncharacterized protein. (97 aa)
	HMGA1	High mobility group AT-hook 1. (107 aa)
	SETBP1	SET binding protein 1. (1596 aa)
	HMGA2	Uncharacterized protein. (118 aa)
	ASH1L	ASH1 like histone lysine methyltransferase. (2969 aa)
	BAZ2A	Bromodomain adjacent to zinc finger domain 2A. (1893 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAZ2A	SRCAP	ENSCCAP00000031296	ENSCCAP00000020512	Bromodomain adjacent to zinc finger domain 2A.	Uncharacterized protein.	0.547
ENSCCAP00000005370	HMGA2	ENSCCAP00000005370	ENSCCAP00000014501	Uncharacterized protein.	Uncharacterized protein.	0.595
HMGA1	HMGA2	ENSCCAP00000013031	ENSCCAP00000014501	High mobility group AT-hook 1.	Uncharacterized protein.	0.595
HMGA2	ENSCCAP00000005370	ENSCCAP00000014501	ENSCCAP00000005370	Uncharacterized protein.	Uncharacterized protein.	0.595
HMGA2	HMGA1	ENSCCAP00000014501	ENSCCAP00000013031	Uncharacterized protein.	High mobility group AT-hook 1.	0.595
SRCAP	BAZ2A	ENSCCAP00000020512	ENSCCAP00000031296	Uncharacterized protein.	Bromodomain adjacent to zinc finger domain 2A.	0.547