41 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108315963	Ubiquitin-like domain-containing protein. (156 aa)
	USP9X	Ubiquitin specific peptidase 9 X-linked; Belongs to the peptidase C19 family. (2330 aa)
	LOC108290397	Ubiquitin-like domain-containing protein. (156 aa)
	LOC108306503	Ubiquitin-like domain-containing protein. (156 aa)
	ENSCCAP00000005634	Hist_deacetyl domain-containing protein. (305 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ENSCCAP00000008371	USP domain-containing protein; Belongs to the peptidase C19 family. (699 aa)
	ENSCCAP00000009349	SKIP_SNW domain-containing protein. (447 aa)
	ENSCCAP00000011005	Ubiquitin-like domain-containing protein. (127 aa)
	PPM1A	Protein phosphatase, Mg2+/Mn2+ dependent 1A. (455 aa)
	MAPK1	Mitogen-activated protein kinase. (366 aa)
	LOC108297534	USP domain-containing protein; Belongs to the peptidase C19 family. (2349 aa)
	SMURF2	E3 ubiquitin-protein ligase. (735 aa)
	NEDD4L	NEDD4 like E3 ubiquitin protein ligase. (1254 aa)
	NCOR2	Nuclear receptor corepressor 2. (2513 aa)
	UBE2D1	Ubiquitin conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	TGIF1	TGFB induced factor homeobox 1. (386 aa)
	ENSCCAP00000019878	HECT domain-containing protein. (400 aa)
	SKI	SKI proto-oncogene. (729 aa)
	ENSCCAP00000021037	Ubiquitin-like domain-containing protein. (118 aa)
	ENSCCAP00000022660	Uncharacterized protein. (404 aa)
	ATP1B4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (357 aa)
	SKIL	SKI like proto-oncogene. (684 aa)
	ENSCCAP00000026853	Ubiquitin-like domain-containing protein. (107 aa)
	TRIM33	Tripartite motif containing 33. (1127 aa)
	STAT1	Signal transducer and activator of transcription. (768 aa)
	LOC108285114	Ubiquitin-like domain-containing protein. (156 aa)
	WWTR1	WW domain containing transcription regulator 1. (400 aa)
	SMAD4	Mothers against decapentaplegic homolog. (469 aa)
	PARP1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1013 aa)
	SMAD7	Mothers against decapentaplegic homolog. (480 aa)
	NCOR1	SANT domain-containing protein. (2281 aa)
	SNW1	SNW domain containing 1. (570 aa)
	TGIF2	TGFB induced factor homeobox 2. (237 aa)
	SMAD2	Mothers against decapentaplegic homolog. (467 aa)
	RNF111	Ring finger protein 111. (960 aa)
	MAPK3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (379 aa)
	ENSCCAP00000038324	Ubiquitin-like domain-containing protein. (117 aa)
	RPS27A	Ubiquitin-like domain-containing protein. (156 aa)
	HDAC1	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (482 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP1B4	ENSCCAP00000009349	ENSCCAP00000024186	ENSCCAP00000009349	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	SKIP_SNW domain-containing protein.	0.639
ATP1B4	SNW1	ENSCCAP00000024186	ENSCCAP00000031929	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	SNW domain containing 1.	0.639
ENSCCAP00000005634	ENSCCAP00000009349	ENSCCAP00000005634	ENSCCAP00000009349	Hist_deacetyl domain-containing protein.	SKIP_SNW domain-containing protein.	0.466
ENSCCAP00000005634	ENSCCAP00000022660	ENSCCAP00000005634	ENSCCAP00000022660	Hist_deacetyl domain-containing protein.	Uncharacterized protein.	0.896
ENSCCAP00000005634	NCOR1	ENSCCAP00000005634	ENSCCAP00000030972	Hist_deacetyl domain-containing protein.	SANT domain-containing protein.	0.896
ENSCCAP00000005634	NCOR2	ENSCCAP00000005634	ENSCCAP00000018156	Hist_deacetyl domain-containing protein.	Nuclear receptor corepressor 2.	0.944
ENSCCAP00000005634	PARP1	ENSCCAP00000005634	ENSCCAP00000030861	Hist_deacetyl domain-containing protein.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.426
ENSCCAP00000005634	SMAD2	ENSCCAP00000005634	ENSCCAP00000036665	Hist_deacetyl domain-containing protein.	Mothers against decapentaplegic homolog.	0.718
ENSCCAP00000005634	SMAD3	ENSCCAP00000005634	ENSCCAP00000006038	Hist_deacetyl domain-containing protein.	Mothers against decapentaplegic homolog.	0.634
ENSCCAP00000005634	SMAD4	ENSCCAP00000005634	ENSCCAP00000030667	Hist_deacetyl domain-containing protein.	Mothers against decapentaplegic homolog.	0.635
ENSCCAP00000005634	SNW1	ENSCCAP00000005634	ENSCCAP00000031929	Hist_deacetyl domain-containing protein.	SNW domain containing 1.	0.466
ENSCCAP00000005634	STAT1	ENSCCAP00000005634	ENSCCAP00000027855	Hist_deacetyl domain-containing protein.	Signal transducer and activator of transcription.	0.620
ENSCCAP00000005634	TGIF1	ENSCCAP00000005634	ENSCCAP00000019516	Hist_deacetyl domain-containing protein.	TGFB induced factor homeobox 1.	0.480
ENSCCAP00000005634	TGIF2	ENSCCAP00000005634	ENSCCAP00000032246	Hist_deacetyl domain-containing protein.	TGFB induced factor homeobox 2.	0.436
ENSCCAP00000008371	SMAD4	ENSCCAP00000008371	ENSCCAP00000030667	USP domain-containing protein; Belongs to the peptidase C19 family.	Mothers against decapentaplegic homolog.	0.640
ENSCCAP00000009349	ATP1B4	ENSCCAP00000009349	ENSCCAP00000024186	SKIP_SNW domain-containing protein.	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	0.639
ENSCCAP00000009349	ENSCCAP00000005634	ENSCCAP00000009349	ENSCCAP00000005634	SKIP_SNW domain-containing protein.	Hist_deacetyl domain-containing protein.	0.466
ENSCCAP00000009349	ENSCCAP00000022660	ENSCCAP00000009349	ENSCCAP00000022660	SKIP_SNW domain-containing protein.	Uncharacterized protein.	0.582
ENSCCAP00000009349	HDAC1	ENSCCAP00000009349	ENSCCAP00000040358	SKIP_SNW domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.466
ENSCCAP00000009349	NCOR1	ENSCCAP00000009349	ENSCCAP00000030972	SKIP_SNW domain-containing protein.	SANT domain-containing protein.	0.582