18 items (Cebus capucinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLC25A12	Solute carrier family 25 member 12; Belongs to the mitochondrial carrier (TC 2.A.29) family. (678 aa)
	GADL1	Glutamate decarboxylase like 1. (521 aa)
	ASPA	Aspartoacylase. (313 aa)
	NAALADL2	N-acetylated alpha-linked acidic dipeptidase like 2. (795 aa)
	NAALADL1	N-acetylated alpha-linked acidic dipeptidase like 1. (793 aa)
	NAALAD2	N-acetylated alpha-linked acidic dipeptidase 2. (740 aa)
	ASPG	Asparaginase. (546 aa)
	GOT1L1	Glutamic-oxaloacetic transaminase 1 like 1. (420 aa)
	TMEM109	Transmembrane protein 109. (245 aa)
	FOLH1	Folate hydrolase 1. (749 aa)
	GOT1	Aspartate aminotransferase. (362 aa)
	SLC25A13	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (676 aa)
	NAT8L	N-acetyltransferase 8 like. (302 aa)
	ENSCCAP00000030100	Uncharacterized protein. (86 aa)
	ENSCCAP00000029823	Glutamine amidotransferase type-2 domain-containing protein. (193 aa)
	GOT2	Aspartate aminotransferase. (430 aa)
	NAT14	N-acetyltransferase 14 (putative). (206 aa)
	ENSCCAP00000024907	EF-hand domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (616 aa)

Your Current Organism:

Cebus capucinus

NCBI taxonomy Id: 9516
Other names: C. capucinus, white-faced capuchin, white-faced sapajou, white-throated capuchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASPA	ENSCCAP00000029823	ENSCCAP00000007426	ENSCCAP00000029823	Aspartoacylase.	Glutamine amidotransferase type-2 domain-containing protein.	0.942
ASPA	FOLH1	ENSCCAP00000007426	ENSCCAP00000038502	Aspartoacylase.	Folate hydrolase 1.	0.947
ASPA	GOT1	ENSCCAP00000007426	ENSCCAP00000036622	Aspartoacylase.	Aspartate aminotransferase.	0.942
ASPA	GOT2	ENSCCAP00000007426	ENSCCAP00000027869	Aspartoacylase.	Aspartate aminotransferase.	0.941
ASPA	NAALAD2	ENSCCAP00000007426	ENSCCAP00000018325	Aspartoacylase.	N-acetylated alpha-linked acidic dipeptidase 2.	0.608
ASPA	NAALADL1	ENSCCAP00000007426	ENSCCAP00000013551	Aspartoacylase.	N-acetylated alpha-linked acidic dipeptidase like 1.	0.444
ASPA	NAT8L	ENSCCAP00000007426	ENSCCAP00000030782	Aspartoacylase.	N-acetyltransferase 8 like.	0.906
ASPG	ENSCCAP00000029823	ENSCCAP00000002332	ENSCCAP00000029823	Asparaginase.	Glutamine amidotransferase type-2 domain-containing protein.	0.420
ENSCCAP00000029823	ASPA	ENSCCAP00000029823	ENSCCAP00000007426	Glutamine amidotransferase type-2 domain-containing protein.	Aspartoacylase.	0.942
ENSCCAP00000029823	ASPG	ENSCCAP00000029823	ENSCCAP00000002332	Glutamine amidotransferase type-2 domain-containing protein.	Asparaginase.	0.420
ENSCCAP00000029823	GADL1	ENSCCAP00000029823	ENSCCAP00000005867	Glutamine amidotransferase type-2 domain-containing protein.	Glutamate decarboxylase like 1.	0.881
ENSCCAP00000029823	GOT1	ENSCCAP00000029823	ENSCCAP00000036622	Glutamine amidotransferase type-2 domain-containing protein.	Aspartate aminotransferase.	0.959
ENSCCAP00000029823	GOT1L1	ENSCCAP00000029823	ENSCCAP00000003002	Glutamine amidotransferase type-2 domain-containing protein.	Glutamic-oxaloacetic transaminase 1 like 1.	0.958
ENSCCAP00000029823	GOT2	ENSCCAP00000029823	ENSCCAP00000027869	Glutamine amidotransferase type-2 domain-containing protein.	Aspartate aminotransferase.	0.972
ENSCCAP00000029823	NAT14	ENSCCAP00000029823	ENSCCAP00000027807	Glutamine amidotransferase type-2 domain-containing protein.	N-acetyltransferase 14 (putative).	0.438
ENSCCAP00000029823	NAT8L	ENSCCAP00000029823	ENSCCAP00000030782	Glutamine amidotransferase type-2 domain-containing protein.	N-acetyltransferase 8 like.	0.822
ENSCCAP00000029823	TMEM109	ENSCCAP00000029823	ENSCCAP00000039401	Glutamine amidotransferase type-2 domain-containing protein.	Transmembrane protein 109.	0.860
FOLH1	ASPA	ENSCCAP00000038502	ENSCCAP00000007426	Folate hydrolase 1.	Aspartoacylase.	0.947
FOLH1	NAALAD2	ENSCCAP00000038502	ENSCCAP00000018325	Folate hydrolase 1.	N-acetylated alpha-linked acidic dipeptidase 2.	0.570
FOLH1	NAT8L	ENSCCAP00000038502	ENSCCAP00000030782	Folate hydrolase 1.	N-acetyltransferase 8 like.	0.773