(5 nodes) Mixed, incl. Mitochondrial tRNA pseudouridine synthesis, and rRNA (guanosine-2-O-)-methyltransferase activity network (Cercocebus atys)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MTG1	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (336 aa)
	GTPBP8	GTP binding protein 8 (putative). (284 aa)
	MRM3	Mitochondrial rRNA methyltransferase 3. (420 aa)
	MALSU1	Mitochondrial assembly of ribosomal large subunit 1. (235 aa)
	RPUSD4	RNA pseudouridine synthase D4. (377 aa)

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GTPBP8	MALSU1	ENSCATP00000008898	ENSCATP00000031896	GTP binding protein 8 (putative).	Mitochondrial assembly of ribosomal large subunit 1.	0.905
GTPBP8	MRM3	ENSCATP00000008898	ENSCATP00000016300	GTP binding protein 8 (putative).	Mitochondrial rRNA methyltransferase 3.	0.894
GTPBP8	MTG1	ENSCATP00000008898	ENSCATP00000008370	GTP binding protein 8 (putative).	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.926
GTPBP8	RPUSD4	ENSCATP00000008898	ENSCATP00000037713	GTP binding protein 8 (putative).	RNA pseudouridine synthase D4.	0.783
MALSU1	GTPBP8	ENSCATP00000031896	ENSCATP00000008898	Mitochondrial assembly of ribosomal large subunit 1.	GTP binding protein 8 (putative).	0.905
MALSU1	MRM3	ENSCATP00000031896	ENSCATP00000016300	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial rRNA methyltransferase 3.	0.958
MALSU1	MTG1	ENSCATP00000031896	ENSCATP00000008370	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.962
MALSU1	RPUSD4	ENSCATP00000031896	ENSCATP00000037713	Mitochondrial assembly of ribosomal large subunit 1.	RNA pseudouridine synthase D4.	0.869
MRM3	GTPBP8	ENSCATP00000016300	ENSCATP00000008898	Mitochondrial rRNA methyltransferase 3.	GTP binding protein 8 (putative).	0.894
MRM3	MALSU1	ENSCATP00000016300	ENSCATP00000031896	Mitochondrial rRNA methyltransferase 3.	Mitochondrial assembly of ribosomal large subunit 1.	0.958
MRM3	MTG1	ENSCATP00000016300	ENSCATP00000008370	Mitochondrial rRNA methyltransferase 3.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.897
MRM3	RPUSD4	ENSCATP00000016300	ENSCATP00000037713	Mitochondrial rRNA methyltransferase 3.	RNA pseudouridine synthase D4.	0.835
MTG1	GTPBP8	ENSCATP00000008370	ENSCATP00000008898	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	GTP binding protein 8 (putative).	0.926
MTG1	MALSU1	ENSCATP00000008370	ENSCATP00000031896	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Mitochondrial assembly of ribosomal large subunit 1.	0.962
MTG1	MRM3	ENSCATP00000008370	ENSCATP00000016300	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Mitochondrial rRNA methyltransferase 3.	0.897
MTG1	RPUSD4	ENSCATP00000008370	ENSCATP00000037713	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	RNA pseudouridine synthase D4.	0.788
RPUSD4	GTPBP8	ENSCATP00000037713	ENSCATP00000008898	RNA pseudouridine synthase D4.	GTP binding protein 8 (putative).	0.783
RPUSD4	MALSU1	ENSCATP00000037713	ENSCATP00000031896	RNA pseudouridine synthase D4.	Mitochondrial assembly of ribosomal large subunit 1.	0.869
RPUSD4	MRM3	ENSCATP00000037713	ENSCATP00000016300	RNA pseudouridine synthase D4.	Mitochondrial rRNA methyltransferase 3.	0.835
RPUSD4	MTG1	ENSCATP00000037713	ENSCATP00000008370	RNA pseudouridine synthase D4.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.788