(12 nodes) Noc4p-Nop14p complex network (Cercocebus atys)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCATP00000037306	Uncharacterized protein. (235 aa)
	NOC4L	Nucleolar complex associated 4 homolog. (516 aa)
	RSL24D1	Ribosomal L24 domain containing 1. (163 aa)
	ENSCATP00000028631	TRASH domain-containing protein. (71 aa)
	WDR74	WD repeat domain 74. (385 aa)
	ENSCATP00000030878	Uncharacterized protein. (238 aa)
	RPF2	Brix domain-containing protein. (258 aa)
	NOP14	NOP14 nucleolar protein. (857 aa)
	ENSCATP00000013346	Uncharacterized protein. (196 aa)
	ENSCATP00000010945	Brix domain-containing protein. (257 aa)
	GNL2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (731 aa)
	NSA2	NSA2 ribosome biogenesis factor. (260 aa)

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCATP00000010945	ENSCATP00000013346	ENSCATP00000010945	ENSCATP00000013346	Brix domain-containing protein.	Uncharacterized protein.	0.907
ENSCATP00000010945	ENSCATP00000028631	ENSCATP00000010945	ENSCATP00000028631	Brix domain-containing protein.	TRASH domain-containing protein.	0.959
ENSCATP00000010945	ENSCATP00000030878	ENSCATP00000010945	ENSCATP00000030878	Brix domain-containing protein.	Uncharacterized protein.	0.907
ENSCATP00000010945	ENSCATP00000037306	ENSCATP00000010945	ENSCATP00000037306	Brix domain-containing protein.	Uncharacterized protein.	0.907
ENSCATP00000010945	GNL2	ENSCATP00000010945	ENSCATP00000008744	Brix domain-containing protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.982
ENSCATP00000010945	NOC4L	ENSCATP00000010945	ENSCATP00000024355	Brix domain-containing protein.	Nucleolar complex associated 4 homolog.	0.797
ENSCATP00000010945	NOP14	ENSCATP00000010945	ENSCATP00000017038	Brix domain-containing protein.	NOP14 nucleolar protein.	0.819
ENSCATP00000010945	NSA2	ENSCATP00000010945	ENSCATP00000008683	Brix domain-containing protein.	NSA2 ribosome biogenesis factor.	0.907
ENSCATP00000010945	RSL24D1	ENSCATP00000010945	ENSCATP00000023725	Brix domain-containing protein.	Ribosomal L24 domain containing 1.	0.959
ENSCATP00000010945	WDR74	ENSCATP00000010945	ENSCATP00000022883	Brix domain-containing protein.	WD repeat domain 74.	0.950
ENSCATP00000013346	ENSCATP00000010945	ENSCATP00000013346	ENSCATP00000010945	Uncharacterized protein.	Brix domain-containing protein.	0.907
ENSCATP00000013346	ENSCATP00000028631	ENSCATP00000013346	ENSCATP00000028631	Uncharacterized protein.	TRASH domain-containing protein.	0.943
ENSCATP00000013346	GNL2	ENSCATP00000013346	ENSCATP00000008744	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.966
ENSCATP00000013346	NOP14	ENSCATP00000013346	ENSCATP00000017038	Uncharacterized protein.	NOP14 nucleolar protein.	0.643
ENSCATP00000013346	RPF2	ENSCATP00000013346	ENSCATP00000021243	Uncharacterized protein.	Brix domain-containing protein.	0.907
ENSCATP00000013346	RSL24D1	ENSCATP00000013346	ENSCATP00000023725	Uncharacterized protein.	Ribosomal L24 domain containing 1.	0.943
ENSCATP00000013346	WDR74	ENSCATP00000013346	ENSCATP00000022883	Uncharacterized protein.	WD repeat domain 74.	0.936
ENSCATP00000028631	ENSCATP00000010945	ENSCATP00000028631	ENSCATP00000010945	TRASH domain-containing protein.	Brix domain-containing protein.	0.959
ENSCATP00000028631	ENSCATP00000013346	ENSCATP00000028631	ENSCATP00000013346	TRASH domain-containing protein.	Uncharacterized protein.	0.943
ENSCATP00000028631	ENSCATP00000030878	ENSCATP00000028631	ENSCATP00000030878	TRASH domain-containing protein.	Uncharacterized protein.	0.943