(14 nodes) ARID DNA-binding domain network (Cercocebus atys)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KDM5B	Lysine demethylase 5B. (1501 aa)
	ARID1B	AT-rich interaction domain 1B. (2293 aa)
	ARID2	AT-rich interaction domain 2. (1836 aa)
	ARID3B	AT-rich interaction domain 3B. (571 aa)
	KDM5C	Lysine demethylase 5C. (1560 aa)
	ARID4A	AT-rich interaction domain 4A. (1263 aa)
	ARID4B	AT-rich interaction domain 4B. (1314 aa)
	KDM5A	Lysine demethylase 5A. (1690 aa)
	JARID2	Jumonji and AT-rich interaction domain containing 2. (1246 aa)
	ARID3C	AT-rich interaction domain 3C. (411 aa)
	ARID5A	AT-rich interaction domain 5A. (594 aa)
	ARID1A	AT-rich interaction domain 1A. (2286 aa)
	ARID5B	AT-rich interaction domain 5B. (1188 aa)
	ARID3A	AT-rich interaction domain 3A. (579 aa)

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1A	ARID1B	ENSCATP00000024126	ENSCATP00000028831	AT-rich interaction domain 1A.	AT-rich interaction domain 1B.	0.992
ARID1A	ARID2	ENSCATP00000024126	ENSCATP00000034531	AT-rich interaction domain 1A.	AT-rich interaction domain 2.	0.742
ARID1B	ARID1A	ENSCATP00000028831	ENSCATP00000024126	AT-rich interaction domain 1B.	AT-rich interaction domain 1A.	0.992
ARID1B	ARID2	ENSCATP00000028831	ENSCATP00000034531	AT-rich interaction domain 1B.	AT-rich interaction domain 2.	0.746
ARID2	ARID1A	ENSCATP00000034531	ENSCATP00000024126	AT-rich interaction domain 2.	AT-rich interaction domain 1A.	0.742
ARID2	ARID1B	ENSCATP00000034531	ENSCATP00000028831	AT-rich interaction domain 2.	AT-rich interaction domain 1B.	0.746
ARID3A	ARID3B	ENSCATP00000026520	ENSCATP00000035775	AT-rich interaction domain 3A.	AT-rich interaction domain 3B.	0.611
ARID3B	ARID3A	ENSCATP00000035775	ENSCATP00000026520	AT-rich interaction domain 3B.	AT-rich interaction domain 3A.	0.611
ARID3B	ARID5A	ENSCATP00000035775	ENSCATP00000024001	AT-rich interaction domain 3B.	AT-rich interaction domain 5A.	0.477
ARID4A	ARID4B	ENSCATP00000037889	ENSCATP00000039043	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.616
ARID4A	ARID5A	ENSCATP00000037889	ENSCATP00000024001	AT-rich interaction domain 4A.	AT-rich interaction domain 5A.	0.416
ARID4A	KDM5B	ENSCATP00000037889	ENSCATP00000027699	AT-rich interaction domain 4A.	Lysine demethylase 5B.	0.427
ARID4B	ARID4A	ENSCATP00000039043	ENSCATP00000037889	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.616
ARID5A	ARID3B	ENSCATP00000024001	ENSCATP00000035775	AT-rich interaction domain 5A.	AT-rich interaction domain 3B.	0.477
ARID5A	ARID4A	ENSCATP00000024001	ENSCATP00000037889	AT-rich interaction domain 5A.	AT-rich interaction domain 4A.	0.416
KDM5B	ARID4A	ENSCATP00000027699	ENSCATP00000037889	Lysine demethylase 5B.	AT-rich interaction domain 4A.	0.427