(55 nodes) Rab subfamily of small GTPases network (Cercocebus atys)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB44	RAB44, member RAS oncogene family. (1020 aa)
	RAB30	RAB30, member RAS oncogene family. (203 aa)
	RAB43	RAB43, member RAS oncogene family. (212 aa)
	RAB22A	RAB22A, member RAS oncogene family. (194 aa)
	RAB18	RAB18, member RAS oncogene family. (234 aa)
	RAB33B	RAB33B, member RAS oncogene family. (229 aa)
	RAB36	RAB36, member RAS oncogene family. (333 aa)
	RAB10	RAB10, member RAS oncogene family. (200 aa)
	RAB1B	RAB1B, member RAS oncogene family. (203 aa)
	RAB6A	RAB6A, member RAS oncogene family. (208 aa)
	RAB9A	RAB9A, member RAS oncogene family. (201 aa)
	RAB39A	RAB39A, member RAS oncogene family. (217 aa)
	RAB33A	RAB33A, member RAS oncogene family. (237 aa)
	ENSCATP00000007470	Uncharacterized protein. (174 aa)
	RAB31	RAB31, member RAS oncogene family. (194 aa)
	RAB27A	RAB27A, member RAS oncogene family. (221 aa)
	RAB23	RAB23, member RAS oncogene family. (237 aa)
	RAB2A	RAB2A, member RAS oncogene family. (212 aa)
	RAB40B	RAB40B, member RAS oncogene family. (269 aa)
	RAB11B	Uncharacterized protein. (442 aa)
	RAB21	RAB21, member RAS oncogene family. (223 aa)
	RAB19	RAB19, member RAS oncogene family. (217 aa)
	RAB17	RAB17, member RAS oncogene family. (212 aa)
	RAB1A	Uncharacterized protein. (217 aa)
	RAB3C	RAB3C, member RAS oncogene family. (219 aa)
	RAB7B	RAB7B, member RAS oncogene family. (202 aa)
	RAB4B	Uncharacterized protein. (213 aa)
	RAB5A	Uncharacterized protein. (215 aa)
	RAB27B	RAB27B, member RAS oncogene family. (218 aa)
	RAB8B	RAB8B, member RAS oncogene family. (207 aa)
	RAB38	RAB38, member RAS oncogene family. (211 aa)
	RAB11A	RAB11A, member RAS oncogene family. (216 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	RAB3B	RAB3B, member RAS oncogene family. (219 aa)
	RAB14	RAB14, member RAS oncogene family. (215 aa)
	RAB32	Uncharacterized protein. (225 aa)
	RAB29	RAB29, member RAS oncogene family. (203 aa)
	RAB4A	RAB4A, member RAS oncogene family. (220 aa)
	RAB41	RAB41, member RAS oncogene family. (223 aa)
	RAB35	RAB35, member RAS oncogene family. (201 aa)
	RAB3D	RAB3D, member RAS oncogene family. (219 aa)
	RAB12	RAB12, member RAS oncogene family. (249 aa)
	RAB24	RAB24, member RAS oncogene family. (203 aa)
	RAB40C	RAB40C, member RAS oncogene family. (281 aa)
	ENSCATP00000030079	Uncharacterized protein. (211 aa)
	RAB5C	RAB5C, member RAS oncogene family. (246 aa)
	CRACR2A	Calcium release activated channel regulator 2A. (731 aa)
	RAB15	RAB15, member RAS oncogene family. (212 aa)
	RAB6B	RAB6B, member RAS oncogene family. (208 aa)
	RAB13	Uncharacterized protein. (203 aa)
	RAB3A	RAB3A, member RAS oncogene family. (215 aa)
	RAB8A	RAB8A, member RAS oncogene family. (186 aa)
	RAB37	RAB37, member RAS oncogene family. (216 aa)
	RAB2B	RAB2B, member RAS oncogene family. (216 aa)
	RAB26	RAB26, member RAS oncogene family. (256 aa)

Your Current Organism:

Cercocebus atys

NCBI taxonomy Id: 9531
Other names: C. atys, Cercocebus torquatus atys, sooty mangabey

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCATP00000007470	RAB11A	ENSCATP00000007470	ENSCATP00000022209	Uncharacterized protein.	RAB11A, member RAS oncogene family.	0.411
ENSCATP00000007470	RAB11B	ENSCATP00000007470	ENSCATP00000009873	Uncharacterized protein.	Uncharacterized protein.	0.402
ENSCATP00000007470	RAB14	ENSCATP00000007470	ENSCATP00000024416	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.530
ENSCATP00000007470	RAB17	ENSCATP00000007470	ENSCATP00000012849	Uncharacterized protein.	RAB17, member RAS oncogene family.	0.400
ENSCATP00000007470	RAB18	ENSCATP00000007470	ENSCATP00000002274	Uncharacterized protein.	RAB18, member RAS oncogene family.	0.420
ENSCATP00000007470	RAB2B	ENSCATP00000007470	ENSCATP00000044773	Uncharacterized protein.	RAB2B, member RAS oncogene family.	0.404
ENSCATP00000007470	RAB41	ENSCATP00000007470	ENSCATP00000028120	Uncharacterized protein.	RAB41, member RAS oncogene family.	0.408
ENSCATP00000007470	RAB4A	ENSCATP00000007470	ENSCATP00000027324	Uncharacterized protein.	RAB4A, member RAS oncogene family.	0.452
ENSCATP00000007470	RAB4B	ENSCATP00000007470	ENSCATP00000016182	Uncharacterized protein.	Uncharacterized protein.	0.436
ENSCATP00000007470	RAB5C	ENSCATP00000007470	ENSCATP00000036098	Uncharacterized protein.	RAB5C, member RAS oncogene family.	0.879
ENSCATP00000007470	RAB7B	ENSCATP00000007470	ENSCATP00000014713	Uncharacterized protein.	RAB7B, member RAS oncogene family.	0.530
ENSCATP00000007470	RAB9A	ENSCATP00000007470	ENSCATP00000005593	Uncharacterized protein.	RAB9A, member RAS oncogene family.	0.587
ENSCATP00000030079	RAB11A	ENSCATP00000030079	ENSCATP00000022209	Uncharacterized protein.	RAB11A, member RAS oncogene family.	0.412
ENSCATP00000030079	RAB11B	ENSCATP00000030079	ENSCATP00000009873	Uncharacterized protein.	Uncharacterized protein.	0.413
ENSCATP00000030079	RAB14	ENSCATP00000030079	ENSCATP00000024416	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.525
ENSCATP00000030079	RAB17	ENSCATP00000030079	ENSCATP00000012849	Uncharacterized protein.	RAB17, member RAS oncogene family.	0.402
ENSCATP00000030079	RAB18	ENSCATP00000030079	ENSCATP00000002274	Uncharacterized protein.	RAB18, member RAS oncogene family.	0.422
ENSCATP00000030079	RAB41	ENSCATP00000030079	ENSCATP00000028120	Uncharacterized protein.	RAB41, member RAS oncogene family.	0.410
ENSCATP00000030079	RAB4A	ENSCATP00000030079	ENSCATP00000027324	Uncharacterized protein.	RAB4A, member RAS oncogene family.	0.447
ENSCATP00000030079	RAB4B	ENSCATP00000030079	ENSCATP00000016182	Uncharacterized protein.	Uncharacterized protein.	0.431