Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
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Fusion
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVEN_4016
Glycine or D-amino acid oxidases. (462 aa)
SVEN_4017
Hypothetical protein. (241 aa)
SVEN_4018
Aminoglycoside phosphotransferase. (298 aa)
SVEN_4019
Acetyltransferase. (159 aa)
SVEN_4020
Hypothetical protein. (112 aa)
Your Current Organism:
Streptomyces venezuelae
NCBI taxonomy Id: 953739 Other names: S. venezuelae ATCC 10712, Streptomyces venezuelae ATCC 10712, Streptomyces venezuelae ISP 5230, Streptomyces venezuelae str. ATCC 10712, Streptomyces venezuelae strain ATCC 10712