24 items (Macaca nemestrina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HOOK3	Hook microtubule tethering protein 3. (718 aa)
	TMEM201	Transmembrane protein 201. (672 aa)
	LMNA	Lamin A/C; Belongs to the intermediate filament family. (663 aa)
	DCTN1	CAP-Gly domain-containing protein. (1278 aa)
	LMNB2	Lamin B2; Belongs to the intermediate filament family. (601 aa)
	DYNC1H1	Dynein cytoplasmic 1 heavy chain 1. (4586 aa)
	ENSMNEP00000034709	Uncharacterized protein. (439 aa)
	FHOD1	Formin homology 2 domain containing 1. (1190 aa)
	SUN1	Sad1 and UNC84 domain containing 1. (932 aa)
	SYNE3	Spectrin repeat containing nuclear envelope family member 3. (975 aa)
	PCM1	Pericentriolar material 1. (2082 aa)
	ENSMNEP00000024989	KASH domain-containing protein. (3507 aa)
	CEP120	Centrosomal protein 120. (986 aa)
	LMNB1	Lamin B1; Belongs to the intermediate filament family. (586 aa)
	ENSMNEP00000019763	Uncharacterized protein. (285 aa)
	FBXW11	F-box and WD repeat domain containing 11. (563 aa)
	DOCK7	Dedicator of cytokinesis 7; Belongs to the DOCK family. (2131 aa)
	CLMN	Calmin. (1002 aa)
	ENSMNEP00000014263	CS domain-containing protein. (325 aa)
	SLIT1	Slit guidance ligand 1. (1534 aa)
	NUDC	Nuclear distribution C, dynein complex regulator. (332 aa)
	FAM193B	Family with sequence similarity 193 member B. (822 aa)
	NTN1	Netrin 1. (604 aa)
	SUN2	Sad1 and UNC84 domain containing 2. (720 aa)

Your Current Organism:

Macaca nemestrina

NCBI taxonomy Id: 9545
Other names: M. nemestrina, pig-tailed macaque, pigtail macaque, pigtail monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEP120	HOOK3	ENSMNEP00000024318	ENSMNEP00000004694	Centrosomal protein 120.	Hook microtubule tethering protein 3.	0.415
CEP120	SUN2	ENSMNEP00000024318	ENSMNEP00000003471	Centrosomal protein 120.	Sad1 and UNC84 domain containing 2.	0.414
DCTN1	DYNC1H1	ENSMNEP00000042816	ENSMNEP00000039490	CAP-Gly domain-containing protein.	Dynein cytoplasmic 1 heavy chain 1.	0.992
DCTN1	PCM1	ENSMNEP00000042816	ENSMNEP00000025703	CAP-Gly domain-containing protein.	Pericentriolar material 1.	0.504
DYNC1H1	DCTN1	ENSMNEP00000039490	ENSMNEP00000042816	Dynein cytoplasmic 1 heavy chain 1.	CAP-Gly domain-containing protein.	0.992
DYNC1H1	ENSMNEP00000014263	ENSMNEP00000039490	ENSMNEP00000014263	Dynein cytoplasmic 1 heavy chain 1.	CS domain-containing protein.	0.642
DYNC1H1	FAM193B	ENSMNEP00000039490	ENSMNEP00000012386	Dynein cytoplasmic 1 heavy chain 1.	Family with sequence similarity 193 member B.	0.545
DYNC1H1	NUDC	ENSMNEP00000039490	ENSMNEP00000012701	Dynein cytoplasmic 1 heavy chain 1.	Nuclear distribution C, dynein complex regulator.	0.642
ENSMNEP00000014263	DYNC1H1	ENSMNEP00000014263	ENSMNEP00000039490	CS domain-containing protein.	Dynein cytoplasmic 1 heavy chain 1.	0.642
ENSMNEP00000019763	ENSMNEP00000024989	ENSMNEP00000019763	ENSMNEP00000024989	Uncharacterized protein.	KASH domain-containing protein.	0.933
ENSMNEP00000019763	FHOD1	ENSMNEP00000019763	ENSMNEP00000034434	Uncharacterized protein.	Formin homology 2 domain containing 1.	0.871
ENSMNEP00000019763	LMNA	ENSMNEP00000019763	ENSMNEP00000046086	Uncharacterized protein.	Lamin A/C; Belongs to the intermediate filament family.	0.719
ENSMNEP00000019763	LMNB1	ENSMNEP00000019763	ENSMNEP00000022120	Uncharacterized protein.	Lamin B1; Belongs to the intermediate filament family.	0.565
ENSMNEP00000019763	LMNB2	ENSMNEP00000019763	ENSMNEP00000041436	Uncharacterized protein.	Lamin B2; Belongs to the intermediate filament family.	0.482
ENSMNEP00000019763	SUN1	ENSMNEP00000019763	ENSMNEP00000029534	Uncharacterized protein.	Sad1 and UNC84 domain containing 1.	0.936
ENSMNEP00000019763	SUN2	ENSMNEP00000019763	ENSMNEP00000003471	Uncharacterized protein.	Sad1 and UNC84 domain containing 2.	0.964
ENSMNEP00000019763	SYNE3	ENSMNEP00000019763	ENSMNEP00000029094	Uncharacterized protein.	Spectrin repeat containing nuclear envelope family member 3.	0.446
ENSMNEP00000024989	ENSMNEP00000019763	ENSMNEP00000024989	ENSMNEP00000019763	KASH domain-containing protein.	Uncharacterized protein.	0.933
ENSMNEP00000024989	FHOD1	ENSMNEP00000024989	ENSMNEP00000034434	KASH domain-containing protein.	Formin homology 2 domain containing 1.	0.871
ENSMNEP00000024989	LMNA	ENSMNEP00000024989	ENSMNEP00000046086	KASH domain-containing protein.	Lamin A/C; Belongs to the intermediate filament family.	0.719