(20 nodes) Polysaccharide binding network (Macaca nemestrina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLEC4G	C-type lectin domain family 4 member G. (293 aa)
	PPP1R3D	Protein phosphatase 1 regulatory subunit. (299 aa)
	PPP1R3E	Protein phosphatase 1 regulatory subunit 3E. (279 aa)
	PPP1R3B	Protein phosphatase 1 regulatory subunit. (285 aa)
	ENPP1	Ectonucleotide pyrophosphatase/phosphodiesterase 1. (904 aa)
	REG4	Regenerating family member 4. (158 aa)
	CLEC18C	Uncharacterized protein. (455 aa)
	EPM2A	EPM2A glucan phosphatase, laforin. (331 aa)
	ENPP2	Ectonucleotide pyrophosphatase/phosphodiesterase 2. (982 aa)
	PTX3	Pentraxin 3. (392 aa)
	AGL	Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase. (1532 aa)
	PPP1R3F	Protein phosphatase 1 regulatory subunit 3F. (798 aa)
	PPP1R3A	Protein phosphatase 1 regulatory subunit 3A. (1145 aa)
	GPCPD1	Glycerophosphocholine phosphodiesterase 1. (649 aa)
	ENDOU	Endonuclease, poly(U) specific. (411 aa)
	PPP1R3C	Protein phosphatase 1 regulatory subunit 3C; Acts as a glycogen-targeting subunit for PP1 and regulates its activity. Activates glycogen synthase, reduces glycogen phosphorylase activity and limits glycogen breakdown. (317 aa)
	CLEC7A	C-type lectin domain containing 7A. (247 aa)
	PRG4	Proteoglycan 4. (1353 aa)
	STBD1	Starch binding domain 1. (358 aa)
	LOC105465950	C-type lectin domain-containing protein. (249 aa)

Your Current Organism:

Macaca nemestrina

NCBI taxonomy Id: 9545
Other names: M. nemestrina, pig-tailed macaque, pigtail macaque, pigtail monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGL	ENPP1	ENSMNEP00000019146	ENSMNEP00000006584	Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase.	Ectonucleotide pyrophosphatase/phosphodiesterase 1.	0.929
AGL	ENPP2	ENSMNEP00000019146	ENSMNEP00000015551	Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase.	Ectonucleotide pyrophosphatase/phosphodiesterase 2.	0.634
AGL	EPM2A	ENSMNEP00000019146	ENSMNEP00000008153	Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase.	EPM2A glucan phosphatase, laforin.	0.482
AGL	STBD1	ENSMNEP00000019146	ENSMNEP00000040180	Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase.	Starch binding domain 1.	0.532
ENPP1	AGL	ENSMNEP00000006584	ENSMNEP00000019146	Ectonucleotide pyrophosphatase/phosphodiesterase 1.	Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase.	0.929
ENPP2	AGL	ENSMNEP00000015551	ENSMNEP00000019146	Ectonucleotide pyrophosphatase/phosphodiesterase 2.	Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase.	0.634
EPM2A	AGL	ENSMNEP00000008153	ENSMNEP00000019146	EPM2A glucan phosphatase, laforin.	Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase.	0.482
EPM2A	PPP1R3C	ENSMNEP00000008153	ENSMNEP00000034502	EPM2A glucan phosphatase, laforin.	Protein phosphatase 1 regulatory subunit 3C; Acts as a glycogen-targeting subunit for PP1 and regulates its activity. Activates glycogen synthase, reduces glycogen phosphorylase activity and limits glycogen breakdown.	0.765
LOC105465950	PTX3	ENSMNEP00000044168	ENSMNEP00000016235	C-type lectin domain-containing protein.	Pentraxin 3.	0.561
PPP1R3A	PPP1R3B	ENSMNEP00000023553	ENSMNEP00000006527	Protein phosphatase 1 regulatory subunit 3A.	Protein phosphatase 1 regulatory subunit.	0.938
PPP1R3A	PPP1R3C	ENSMNEP00000023553	ENSMNEP00000034502	Protein phosphatase 1 regulatory subunit 3A.	Protein phosphatase 1 regulatory subunit 3C; Acts as a glycogen-targeting subunit for PP1 and regulates its activity. Activates glycogen synthase, reduces glycogen phosphorylase activity and limits glycogen breakdown.	0.938
PPP1R3A	PPP1R3D	ENSMNEP00000023553	ENSMNEP00000001157	Protein phosphatase 1 regulatory subunit 3A.	Protein phosphatase 1 regulatory subunit.	0.917
PPP1R3A	PPP1R3E	ENSMNEP00000023553	ENSMNEP00000001303	Protein phosphatase 1 regulatory subunit 3A.	Protein phosphatase 1 regulatory subunit 3E.	0.917
PPP1R3A	PPP1R3F	ENSMNEP00000023553	ENSMNEP00000020173	Protein phosphatase 1 regulatory subunit 3A.	Protein phosphatase 1 regulatory subunit 3F.	0.921
PPP1R3B	PPP1R3A	ENSMNEP00000006527	ENSMNEP00000023553	Protein phosphatase 1 regulatory subunit.	Protein phosphatase 1 regulatory subunit 3A.	0.938
PPP1R3B	PPP1R3C	ENSMNEP00000006527	ENSMNEP00000034502	Protein phosphatase 1 regulatory subunit.	Protein phosphatase 1 regulatory subunit 3C; Acts as a glycogen-targeting subunit for PP1 and regulates its activity. Activates glycogen synthase, reduces glycogen phosphorylase activity and limits glycogen breakdown.	0.956
PPP1R3B	PPP1R3D	ENSMNEP00000006527	ENSMNEP00000001157	Protein phosphatase 1 regulatory subunit.	Protein phosphatase 1 regulatory subunit.	0.918
PPP1R3B	PPP1R3E	ENSMNEP00000006527	ENSMNEP00000001303	Protein phosphatase 1 regulatory subunit.	Protein phosphatase 1 regulatory subunit 3E.	0.894
PPP1R3B	PPP1R3F	ENSMNEP00000006527	ENSMNEP00000020173	Protein phosphatase 1 regulatory subunit.	Protein phosphatase 1 regulatory subunit 3F.	0.921
PPP1R3C	EPM2A	ENSMNEP00000034502	ENSMNEP00000008153	Protein phosphatase 1 regulatory subunit 3C; Acts as a glycogen-targeting subunit for PP1 and regulates its activity. Activates glycogen synthase, reduces glycogen phosphorylase activity and limits glycogen breakdown.	EPM2A glucan phosphatase, laforin.	0.765