(16 nodes) Snf7 family network (Macaca nemestrina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHMP7	Charged multivesicular body protein 7. (453 aa)
	CHMP5	Charged multivesicular body protein 5. (219 aa)
	CHMP6	Charged multivesicular body protein 6. (223 aa)
	ENSMNEP00000028818	Uncharacterized protein. (212 aa)
	ENSMNEP00000041440	Uncharacterized protein. (168 aa)
	CHMP2B	Charged multivesicular body protein 2B. (218 aa)
	LOC105481479	Uncharacterized protein. (115 aa)
	CHMP4B	Charged multivesicular body protein 4B. (210 aa)
	LOC105494194	Uncharacterized protein. (222 aa)
	LOC105465405	Charged multivesicular body protein 3. (222 aa)
	ENSMNEP00000020540	Uncharacterized protein. (299 aa)
	CHMP1A	Charged multivesicular body protein 1A. (196 aa)
	ENSMNEP00000000089	Uncharacterized protein. (197 aa)
	CHMP2A	Charged multivesicular body protein 2A. (222 aa)
	ENSMNEP00000022820	Uncharacterized protein. (148 aa)
	CHMP4C	Charged multivesicular body protein 4C. (233 aa)

Your Current Organism:

Macaca nemestrina

NCBI taxonomy Id: 9545
Other names: M. nemestrina, pig-tailed macaque, pigtail macaque, pigtail monkey

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHMP1A	CHMP2A	ENSMNEP00000021226	ENSMNEP00000022235	Charged multivesicular body protein 1A.	Charged multivesicular body protein 2A.	0.999
CHMP1A	CHMP2B	ENSMNEP00000021226	ENSMNEP00000005840	Charged multivesicular body protein 1A.	Charged multivesicular body protein 2B.	0.999
CHMP1A	CHMP4B	ENSMNEP00000021226	ENSMNEP00000017320	Charged multivesicular body protein 1A.	Charged multivesicular body protein 4B.	0.959
CHMP1A	CHMP4C	ENSMNEP00000021226	ENSMNEP00000023636	Charged multivesicular body protein 1A.	Charged multivesicular body protein 4C.	0.978
CHMP1A	CHMP5	ENSMNEP00000021226	ENSMNEP00000027144	Charged multivesicular body protein 1A.	Charged multivesicular body protein 5.	0.945
CHMP1A	CHMP6	ENSMNEP00000021226	ENSMNEP00000028031	Charged multivesicular body protein 1A.	Charged multivesicular body protein 6.	0.949
CHMP1A	CHMP7	ENSMNEP00000021226	ENSMNEP00000023839	Charged multivesicular body protein 1A.	Charged multivesicular body protein 7.	0.925
CHMP1A	ENSMNEP00000000089	ENSMNEP00000021226	ENSMNEP00000000089	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.931
CHMP1A	ENSMNEP00000020540	ENSMNEP00000021226	ENSMNEP00000020540	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.938
CHMP1A	ENSMNEP00000022820	ENSMNEP00000021226	ENSMNEP00000022820	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.945
CHMP1A	ENSMNEP00000028818	ENSMNEP00000021226	ENSMNEP00000028818	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.959
CHMP1A	ENSMNEP00000041440	ENSMNEP00000021226	ENSMNEP00000041440	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.473
CHMP1A	LOC105465405	ENSMNEP00000021226	ENSMNEP00000020354	Charged multivesicular body protein 1A.	Charged multivesicular body protein 3.	0.968
CHMP1A	LOC105481479	ENSMNEP00000021226	ENSMNEP00000003539	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.617
CHMP1A	LOC105494194	ENSMNEP00000021226	ENSMNEP00000020322	Charged multivesicular body protein 1A.	Uncharacterized protein.	0.670
CHMP2A	CHMP1A	ENSMNEP00000022235	ENSMNEP00000021226	Charged multivesicular body protein 2A.	Charged multivesicular body protein 1A.	0.999
CHMP2A	CHMP2B	ENSMNEP00000022235	ENSMNEP00000005840	Charged multivesicular body protein 2A.	Charged multivesicular body protein 2B.	0.983
CHMP2A	CHMP4B	ENSMNEP00000022235	ENSMNEP00000017320	Charged multivesicular body protein 2A.	Charged multivesicular body protein 4B.	0.988
CHMP2A	CHMP4C	ENSMNEP00000022235	ENSMNEP00000023636	Charged multivesicular body protein 2A.	Charged multivesicular body protein 4C.	0.988
CHMP2A	CHMP5	ENSMNEP00000022235	ENSMNEP00000027144	Charged multivesicular body protein 2A.	Charged multivesicular body protein 5.	0.983