STRINGSTRING
SF3B4 SF3B4 DDX23 DDX23 SNRPD1 SNRPD1 TMIGD2 TMIGD2 SNRNP40 SNRNP40 SNRPC-2 SNRPC-2 SF3B6 SF3B6 SNRPA SNRPA SNRPD2-2 SNRPD2-2 SNRPD2 SNRPD2 SF3B1 SF3B1 TXNL4A TXNL4A ENSPANP00000006774 ENSPANP00000006774 PRPF31 PRPF31 SF3A2 SF3A2 SF3B2 SF3B2 LSM10 LSM10 DDX46 DDX46 LSM8-2 LSM8-2 SNRNP200 SNRNP200 SF3A1 SF3A1 PHF5A PHF5A PRPF6 PRPF6 SNRPA1 SNRPA1 SF3B3 SF3B3 SNRPB2 SNRPB2 SNRNP70 SNRNP70 USP39 USP39 PRPF4 PRPF4 PRPF8 PRPF8 EFTUD2 EFTUD2 SNRPD3 SNRPD3 ENSPANP00000024006 ENSPANP00000024006 SNRPE SNRPE SF3B5 SF3B5 SNRPB SNRPB SART1 SART1 ENSPANP00000027765 ENSPANP00000027765 ENSPANP00000027975 ENSPANP00000027975 ENSPANP00000030279 ENSPANP00000030279 ENSPANP00000030795 ENSPANP00000030795 PRPF3 PRPF3 ENSPANP00000033318 ENSPANP00000033318 SNRPG SNRPG ENSPANP00000035299 ENSPANP00000035299 SNRNP27 SNRNP27 SNRPC SNRPC LSM5-3 LSM5-3 SNRPN SNRPN ENSPANP00000040434 ENSPANP00000040434 SF3A3 SF3A3 ENSPANP00000041983 ENSPANP00000041983 ENSPANP00000042764 ENSPANP00000042764 LRMDA LRMDA ENSPANP00000043697 ENSPANP00000043697 LSM3-2 LSM3-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SF3B4Splicing factor 3b subunit 4. (424 aa)
DDX23DEAD-box helicase 23. (891 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
TMIGD2Transmembrane and immunoglobulin domain containing 2. (275 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (389 aa)
SNRPC-2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (170 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
SNRPASmall nuclear ribonucleoprotein polypeptide A. (282 aa)
SNRPD2-2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
SF3B1Splicing factor 3b subunit 1. (1304 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ENSPANP00000006774Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (81 aa)
PRPF31Nop domain-containing protein. (508 aa)
SF3A2Splicing factor 3a subunit 2. (464 aa)
SF3B2Splicing factor 3b subunit 2. (895 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
DDX46DEAD-box helicase 46. (1016 aa)
LSM8-2U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
SF3A1Splicing factor 3a subunit 1. (793 aa)
PHF5APHD finger protein 5A. (110 aa)
PRPF6Pre-mRNA processing factor 6. (941 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
SF3B3Splicing factor 3b subunit 3. (1217 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (225 aa)
SNRNP70Small nuclear ribonucleoprotein U1 subunit 70. (437 aa)
USP39Ubiquitin specific peptidase 39. (565 aa)
PRPF4Pre-mRNA processing factor 4. (543 aa)
PRPF8Pre-mRNA processing factor 8. (2339 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
ENSPANP00000024006Sm domain-containing protein. (65 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (261 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (800 aa)
ENSPANP00000027765Uncharacterized protein. (54 aa)
ENSPANP00000027975Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (75 aa)
ENSPANP00000030279Matrin-type domain-containing protein. (468 aa)
ENSPANP00000030795Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (70 aa)
PRPF3Pre-mRNA processing factor 3. (683 aa)
ENSPANP00000033318WD_REPEATS_REGION domain-containing protein. (328 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (96 aa)
ENSPANP00000035299Sm domain-containing protein. (127 aa)
SNRNP27SNRNP27 domain-containing protein. (158 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (179 aa)
LSM5-3U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (244 aa)
ENSPANP00000040434RRM domain-containing protein. (180 aa)
SF3A3Splicing factor 3a subunit 3. (504 aa)
ENSPANP00000041983Uncharacterized protein. (422 aa)
ENSPANP00000042764Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (85 aa)
LRMDALeucine rich melanocyte differentiation associated. (226 aa)
ENSPANP00000043697Uncharacterized protein; Belongs to the DEAD box helicase family. (676 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
Your Current Organism:
Papio anubis
NCBI taxonomy Id: 9555
Other names: Anubis baboon, Doguera baboon, Kenya baboon, P. anubis, Papio cynocephalus anubis, Papio doguera, Papio hamadryas anubis, Papio hamadryas doguera, baboon, olive baboon
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