STRINGSTRING
SNRPC-2 SNRPC-2 SMNDC1 SMNDC1 FBLL1 FBLL1 PRPF4 PRPF4 PRPF3 PRPF3 NOLC1 NOLC1 NOP10 NOP10 ENSMLEP00000033809 ENSMLEP00000033809 GAR1 GAR1 FAM118B FAM118B CDK2 CDK2 EWSR1 EWSR1 WRAP53 WRAP53 ELL ELL LSM10 LSM10 USPL1 USPL1 EAF1 EAF1 NHP2 NHP2 TOE1 TOE1 FRG1 FRG1 ENSMLEP00000009809 ENSMLEP00000009809 COIL COIL ZC3H8 ZC3H8 USH1G USH1G ANGEL2 ANGEL2 PRPF31 PRPF31 XPO1 XPO1 OIP5 OIP5 EFTUD2 EFTUD2 ZPR1 ZPR1 ICE1 ICE1 HSPB7 HSPB7 DDX46 DDX46 SNRPC SNRPC SART3 SART3 DKC1 DKC1 AK6 AK6 TGS1 TGS1 ICE2 ICE2 ANKS1B ANKS1B TRIM22 TRIM22 SART1 SART1 PHAX PHAX RDM1 RDM1 LOC105542361 LOC105542361 FBL FBL ZNF473 ZNF473 HABP4 HABP4 HINFP HINFP LOC105543371 LOC105543371 ARIH1 ARIH1 ENSMLEP00000026658 ENSMLEP00000026658 NOP58 NOP58 ISG20 ISG20 LSG1 LSG1 NPAT NPAT GEMIN4 GEMIN4 ENSMLEP00000031060 ENSMLEP00000031060
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPC-2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (174 aa)
SMNDC1Survival motor neuron domain containing 1. (234 aa)
FBLL1Fibrillarin like 1. (312 aa)
PRPF4Pre-mRNA processing factor 4. (543 aa)
PRPF3Pre-mRNA processing factor 3. (580 aa)
NOLC1Nucleolar and coiled-body phosphoprotein 1. (711 aa)
NOP10NOP10 ribonucleoprotein. (64 aa)
ENSMLEP00000033809PWI domain-containing protein. (560 aa)
GAR1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (218 aa)
FAM118BFamily with sequence similarity 118 member B. (351 aa)
CDK2Cyclin dependent kinase 2; Belongs to the protein kinase superfamily. (346 aa)
EWSR1EWS RNA binding protein 1. (661 aa)
WRAP53WD repeat containing antisense to TP53. (531 aa)
ELLElongation factor for RNA polymerase II. (488 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
USPL1Ubiquitin specific peptidase like 1. (1092 aa)
EAF1ELL associated factor 1. (268 aa)
NHP2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (153 aa)
TOE1Target of EGR1, exonuclease. (519 aa)
FRG1FSHD region gene 1. (258 aa)
ENSMLEP00000009809Ribosomal_L7Ae domain-containing protein. (129 aa)
COILCoilin. (576 aa)
ZC3H8Zinc finger CCCH-type containing 8. (295 aa)
USH1GUSH1 protein network component sans. (429 aa)
ANGEL2Angel homolog 2. (544 aa)
PRPF31Pre-mRNA processing factor 31. (499 aa)
XPO1Exportin 1. (1070 aa)
OIP5Opa interacting protein 5. (229 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
ZPR1ZPR1 zinc finger. (459 aa)
ICE1Interactor of little elongation complex ELL subunit 1. (2239 aa)
HSPB7Heat shock protein family B (small) member 7; Belongs to the small heat shock protein (HSP20) family. (253 aa)
DDX46DEAD-box helicase 46. (1031 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (179 aa)
SART3Spliceosome associated factor 3, U4/U6 recycling protein. (981 aa)
DKC1Dyskerin pseudouridine synthase 1. (514 aa)
AK6Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (172 aa)
TGS1Trimethylguanosine synthase 1. (855 aa)
ICE2Interactor of little elongation complex ELL subunit 2. (982 aa)
ANKS1BAnkyrin repeat and sterile alpha motif domain containing 1B. (1248 aa)
TRIM22Tripartite motif containing 22. (498 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (729 aa)
PHAXPhosphorylated adaptor for RNA export. (394 aa)
RDM1RAD52 motif containing 1. (284 aa)
LOC105542361HNF-1_N domain-containing protein. (198 aa)
FBLFibrillarin. (318 aa)
ZNF473Zinc finger protein 473. (871 aa)
HABP4Hyaluronan binding protein 4. (373 aa)
HINFPHistone H4 transcription factor. (517 aa)
LOC105543371Tudor domain-containing protein. (293 aa)
ARIH1RBR-type E3 ubiquitin transferase. (407 aa)
ENSMLEP00000026658Coilin_N domain-containing protein. (478 aa)
NOP58NOP58 ribonucleoprotein. (537 aa)
ISG20Interferon stimulated exonuclease gene 20. (181 aa)
LSG1Large 60S subunit nuclear export GTPase 1. (658 aa)
NPATNuclear protein, coactivator of histone transcription. (1421 aa)
GEMIN4Gem nuclear organelle associated protein 4. (1057 aa)
ENSMLEP00000031060Matrin-type domain-containing protein. (171 aa)
Your Current Organism:
Mandrillus leucophaeus
NCBI taxonomy Id: 9568
Other names: M. leucophaeus, Papio leucophaeus, drill
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