(12 nodes) Embryoid body network (Gorilla gorilla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3RTC0_GORGO	Sox C-terminal domain-containing protein. (113 aa)
	NANOGP8	Nanog homeobox retrogene P8. (305 aa)
	POU5F1	POU domain protein. (360 aa)
	G3RDK5_GORGO	Homeobox domain-containing protein. (166 aa)
	BMP4	Bone morphogenetic protein 4. (408 aa)
	ENSGGOP00000042984	Homeobox domain-containing protein. (245 aa)
	FGF2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (258 aa)
	G3SJ95_GORGO	Homeobox domain-containing protein. (282 aa)
	KLF4	Kruppel like factor 4. (479 aa)
	G3S9E3_GORGO	Homeobox domain-containing protein. (290 aa)
	ENSGGOP00000024523	annotation not available (408 aa)
	SOX17	HMG box domain-containing protein. (184 aa)

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMP4	FGF2	ENSGGOP00000014564	ENSGGOP00000033172	Bone morphogenetic protein 4.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.642
BMP4	NANOGP8	ENSGGOP00000014564	ENSGGOP00000023042	Bone morphogenetic protein 4.	Nanog homeobox retrogene P8.	0.508
BMP4	SOX17	ENSGGOP00000014564	ENSGGOP00000023161	Bone morphogenetic protein 4.	HMG box domain-containing protein.	0.459
ENSGGOP00000024523	FGF2	ENSGGOP00000024523	ENSGGOP00000033172	annotation not available	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.539
ENSGGOP00000042984	FGF2	ENSGGOP00000042984	ENSGGOP00000033172	Homeobox domain-containing protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.556
ENSGGOP00000042984	G3RTC0_GORGO	ENSGGOP00000042984	ENSGGOP00000019045	Homeobox domain-containing protein.	Sox C-terminal domain-containing protein.	0.431
ENSGGOP00000042984	KLF4	ENSGGOP00000042984	ENSGGOP00000028127	Homeobox domain-containing protein.	Kruppel like factor 4.	0.777
ENSGGOP00000042984	POU5F1	ENSGGOP00000042984	ENSGGOP00000022447	Homeobox domain-containing protein.	POU domain protein.	0.936
ENSGGOP00000042984	SOX17	ENSGGOP00000042984	ENSGGOP00000023161	Homeobox domain-containing protein.	HMG box domain-containing protein.	0.431
FGF2	BMP4	ENSGGOP00000033172	ENSGGOP00000014564	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Bone morphogenetic protein 4.	0.642
FGF2	ENSGGOP00000024523	ENSGGOP00000033172	ENSGGOP00000024523	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	annotation not available	0.539
FGF2	ENSGGOP00000042984	ENSGGOP00000033172	ENSGGOP00000042984	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Homeobox domain-containing protein.	0.556
FGF2	G3S9E3_GORGO	ENSGGOP00000033172	ENSGGOP00000024709	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Homeobox domain-containing protein.	0.556
FGF2	G3SJ95_GORGO	ENSGGOP00000033172	ENSGGOP00000028185	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Homeobox domain-containing protein.	0.556
FGF2	KLF4	ENSGGOP00000033172	ENSGGOP00000028127	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Kruppel like factor 4.	0.594
FGF2	NANOGP8	ENSGGOP00000033172	ENSGGOP00000023042	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Nanog homeobox retrogene P8.	0.746
FGF2	POU5F1	ENSGGOP00000033172	ENSGGOP00000022447	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	POU domain protein.	0.659
G3RDK5_GORGO	POU5F1	ENSGGOP00000013613	ENSGGOP00000022447	Homeobox domain-containing protein.	POU domain protein.	0.775
G3RTC0_GORGO	ENSGGOP00000042984	ENSGGOP00000019045	ENSGGOP00000042984	Sox C-terminal domain-containing protein.	Homeobox domain-containing protein.	0.431
G3RTC0_GORGO	G3S9E3_GORGO	ENSGGOP00000019045	ENSGGOP00000024709	Sox C-terminal domain-containing protein.	Homeobox domain-containing protein.	0.431