(5 nodes) Mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) network (Gorilla gorilla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ATP5F1D	ATP synthase F1 subunit delta. (168 aa)
	ATP5F1C	ATP synthase subunit gamma. (298 aa)
	ATP5F1B	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (529 aa)
	ATP5F1A	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (576 aa)
	ATP5PB	ATP synthase peripheral stalk-membrane subunit b. (274 aa)

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5F1A	ATP5F1B	ENSGGOP00000039978	ENSGGOP00000011311	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1A	ATP5F1C	ENSGGOP00000039978	ENSGGOP00000009493	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
ATP5F1A	ATP5F1D	ENSGGOP00000039978	ENSGGOP00000002297	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase F1 subunit delta.	0.999
ATP5F1A	ATP5PB	ENSGGOP00000039978	ENSGGOP00000050009	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase peripheral stalk-membrane subunit b.	0.999
ATP5F1B	ATP5F1A	ENSGGOP00000011311	ENSGGOP00000039978	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1B	ATP5F1C	ENSGGOP00000011311	ENSGGOP00000009493	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
ATP5F1B	ATP5F1D	ENSGGOP00000011311	ENSGGOP00000002297	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase F1 subunit delta.	0.998
ATP5F1B	ATP5PB	ENSGGOP00000011311	ENSGGOP00000050009	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase peripheral stalk-membrane subunit b.	0.999
ATP5F1C	ATP5F1A	ENSGGOP00000009493	ENSGGOP00000039978	ATP synthase subunit gamma.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1C	ATP5F1B	ENSGGOP00000009493	ENSGGOP00000011311	ATP synthase subunit gamma.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1C	ATP5F1D	ENSGGOP00000009493	ENSGGOP00000002297	ATP synthase subunit gamma.	ATP synthase F1 subunit delta.	0.998
ATP5F1C	ATP5PB	ENSGGOP00000009493	ENSGGOP00000050009	ATP synthase subunit gamma.	ATP synthase peripheral stalk-membrane subunit b.	0.999
ATP5F1D	ATP5F1A	ENSGGOP00000002297	ENSGGOP00000039978	ATP synthase F1 subunit delta.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1D	ATP5F1B	ENSGGOP00000002297	ENSGGOP00000011311	ATP synthase F1 subunit delta.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
ATP5F1D	ATP5F1C	ENSGGOP00000002297	ENSGGOP00000009493	ATP synthase F1 subunit delta.	ATP synthase subunit gamma.	0.998
ATP5F1D	ATP5PB	ENSGGOP00000002297	ENSGGOP00000050009	ATP synthase F1 subunit delta.	ATP synthase peripheral stalk-membrane subunit b.	0.999
ATP5PB	ATP5F1A	ENSGGOP00000050009	ENSGGOP00000039978	ATP synthase peripheral stalk-membrane subunit b.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5PB	ATP5F1B	ENSGGOP00000050009	ENSGGOP00000011311	ATP synthase peripheral stalk-membrane subunit b.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5PB	ATP5F1C	ENSGGOP00000050009	ENSGGOP00000009493	ATP synthase peripheral stalk-membrane subunit b.	ATP synthase subunit gamma.	0.999
ATP5PB	ATP5F1D	ENSGGOP00000050009	ENSGGOP00000002297	ATP synthase peripheral stalk-membrane subunit b.	ATP synthase F1 subunit delta.	0.999