(12 nodes) tRNA transport network (Gorilla gorilla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NOL6	Nucleolar protein 6. (1155 aa)
	TOMM20L	Translocase of outer mitochondrial membrane 20 like. (152 aa)
	YBX1	Y-box binding protein 1. (324 aa)
	G3R793_GORGO	HTH La-type RNA-binding domain-containing protein. (148 aa)
	G3RM55_GORGO	HTH La-type RNA-binding domain-containing protein. (368 aa)
	G3RT71_GORGO	CSD_1 domain-containing protein. (318 aa)
	G3S2R7_GORGO	CSP domain-containing protein. (280 aa)
	XPOT	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (962 aa)
	G3S8E4_GORGO	CSP domain-containing protein. (314 aa)
	TOMM20	Translocase of outer mitochondrial membrane 20. (145 aa)
	SSB	RRM_3 domain-containing protein. (245 aa)
	ENSGGOP00000051175	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (897 aa)

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3R793_GORGO	SSB	ENSGGOP00000011224	ENSGGOP00000027213	HTH La-type RNA-binding domain-containing protein.	RRM_3 domain-containing protein.	0.892
G3RT71_GORGO	G3S2R7_GORGO	ENSGGOP00000018996	ENSGGOP00000022365	CSD_1 domain-containing protein.	CSP domain-containing protein.	0.547
G3RT71_GORGO	G3S8E4_GORGO	ENSGGOP00000018996	ENSGGOP00000024357	CSD_1 domain-containing protein.	CSP domain-containing protein.	0.545
G3RT71_GORGO	YBX1	ENSGGOP00000018996	ENSGGOP00000004660	CSD_1 domain-containing protein.	Y-box binding protein 1.	0.544
G3S2R7_GORGO	G3RT71_GORGO	ENSGGOP00000022365	ENSGGOP00000018996	CSP domain-containing protein.	CSD_1 domain-containing protein.	0.547
G3S2R7_GORGO	G3S8E4_GORGO	ENSGGOP00000022365	ENSGGOP00000024357	CSP domain-containing protein.	CSP domain-containing protein.	0.544
G3S2R7_GORGO	YBX1	ENSGGOP00000022365	ENSGGOP00000004660	CSP domain-containing protein.	Y-box binding protein 1.	0.544
G3S8E4_GORGO	G3RT71_GORGO	ENSGGOP00000024357	ENSGGOP00000018996	CSP domain-containing protein.	CSD_1 domain-containing protein.	0.545
G3S8E4_GORGO	G3S2R7_GORGO	ENSGGOP00000024357	ENSGGOP00000022365	CSP domain-containing protein.	CSP domain-containing protein.	0.544
G3S8E4_GORGO	YBX1	ENSGGOP00000024357	ENSGGOP00000004660	CSP domain-containing protein.	Y-box binding protein 1.	0.543
SSB	G3R793_GORGO	ENSGGOP00000027213	ENSGGOP00000011224	RRM_3 domain-containing protein.	HTH La-type RNA-binding domain-containing protein.	0.892
TOMM20	TOMM20L	ENSGGOP00000026992	ENSGGOP00000001713	Translocase of outer mitochondrial membrane 20.	Translocase of outer mitochondrial membrane 20 like.	0.558
TOMM20L	TOMM20	ENSGGOP00000001713	ENSGGOP00000026992	Translocase of outer mitochondrial membrane 20 like.	Translocase of outer mitochondrial membrane 20.	0.558
YBX1	G3RT71_GORGO	ENSGGOP00000004660	ENSGGOP00000018996	Y-box binding protein 1.	CSD_1 domain-containing protein.	0.544
YBX1	G3S2R7_GORGO	ENSGGOP00000004660	ENSGGOP00000022365	Y-box binding protein 1.	CSP domain-containing protein.	0.544
YBX1	G3S8E4_GORGO	ENSGGOP00000004660	ENSGGOP00000024357	Y-box binding protein 1.	CSP domain-containing protein.	0.543