(57 nodes) Rab subfamily of small GTPases network (Gorilla gorilla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB38	RAB38, member RAS oncogene family. (211 aa)
	RAB6A	RAB6A, member RAS oncogene family. (208 aa)
	RAB36	RAB36, member RAS oncogene family. (333 aa)
	RAB33B	RAB33B, member RAS oncogene family. (229 aa)
	ENSGGOP00000041396	Uncharacterized protein. (189 aa)
	ENSGGOP00000038448	RAB40C, member RAS oncogene family. (281 aa)
	RAB3B	RAB3B, member RAS oncogene family. (219 aa)
	RAB43	RAB43, member RAS oncogene family. (212 aa)
	RAB7A	RAB7A, member RAS oncogene family. (207 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	G3QSJ6_GORGO	RAB44, member RAS oncogene family. (1021 aa)
	RAB15	Uncharacterized protein. (208 aa)
	RAB41	RAB41, member RAS oncogene family. (221 aa)
	RASEF	RAS and EF-hand domain containing. (740 aa)
	RAB25	RAB25, member RAS oncogene family. (213 aa)
	G3QZD5_GORGO	RAB40B, member RAS oncogene family. (288 aa)
	RAB42	RAB42, member RAS oncogene family. (218 aa)
	RAB8B	RAB8B, member RAS oncogene family. (207 aa)
	RAB9B	RAB9B, member RAS oncogene family. (201 aa)
	RAB1B	Uncharacterized protein. (216 aa)
	CRACR2A	Calcium release activated channel regulator 2A. (731 aa)
	RAB6B	RAB6B, member RAS oncogene family. (208 aa)
	RAB33A	RAB33A, member RAS oncogene family. (237 aa)
	RAB9A	RAB9A, member RAS oncogene family. (201 aa)
	RAB13	Uncharacterized protein. (203 aa)
	RAB26	RAB26, member RAS oncogene family. (256 aa)
	RAB14	RAB14, member RAS oncogene family. (215 aa)
	ENSGGOP00000044354	Uncharacterized protein. (189 aa)
	RAB19	RAB19, member RAS oncogene family. (217 aa)
	RAB10	RAB10, member RAS oncogene family. (200 aa)
	RAB24	RAB24, member RAS oncogene family. (203 aa)
	RAB30	RAB30, member RAS oncogene family. (203 aa)
	RAB29	RAB29, member RAS oncogene family. (203 aa)
	RAB3C	RAB3C, member RAS oncogene family. (227 aa)
	RAB3A	RAB3A, member RAS oncogene family. (220 aa)
	RAB11A	RAB11A, member RAS oncogene family. (216 aa)
	RAB27A	RAB27A, member RAS oncogene family. (221 aa)
	RAB17	RAB17, member RAS oncogene family. (212 aa)
	RAB5A	RAB5A, member RAS oncogene family. (215 aa)
	RAB4A	RAB4A, member RAS oncogene family. (218 aa)
	RAB27B	RAB27B, member RAS oncogene family. (218 aa)
	RAB22A	RAB22A, member RAS oncogene family. (194 aa)
	RAB8A	RAB8A, member RAS oncogene family. (207 aa)
	RAB11B	Uncharacterized protein. (221 aa)
	ENSGGOP00000030458	RAB18, member RAS oncogene family. (235 aa)
	RAB4B	Uncharacterized protein. (214 aa)
	ENSGGOP00000032812	Uncharacterized protein. (173 aa)
	RAB2A	RAB2A, member RAS oncogene family. (212 aa)
	ENSGGOP00000035429	Uncharacterized protein. (320 aa)
	RAB2B	RAB2B, member RAS oncogene family. (216 aa)
	RAB21	RAB21, member RAS oncogene family. (237 aa)
	RAB1A	RAB1A, member RAS oncogene family. (205 aa)
	RAB31	RAB31, member RAS oncogene family. (195 aa)
	G3SFF7_GORGO	RAB37, member RAS oncogene family. (223 aa)
	RAB5C	RAB5C, member RAS oncogene family. (249 aa)
	RAB3D	RAB3D, member RAS oncogene family. (219 aa)
	RAB7B	RAB7B, member RAS oncogene family. (174 aa)

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGGOP00000030458	ENSGGOP00000044354	ENSGGOP00000030458	ENSGGOP00000044354	RAB18, member RAS oncogene family.	Uncharacterized protein.	0.429
ENSGGOP00000030458	RAB11A	ENSGGOP00000030458	ENSGGOP00000013901	RAB18, member RAS oncogene family.	RAB11A, member RAS oncogene family.	0.412
ENSGGOP00000030458	RAB11B	ENSGGOP00000030458	ENSGGOP00000028164	RAB18, member RAS oncogene family.	Uncharacterized protein.	0.400
ENSGGOP00000030458	RAB14	ENSGGOP00000030458	ENSGGOP00000021747	RAB18, member RAS oncogene family.	RAB14, member RAS oncogene family.	0.528
ENSGGOP00000030458	RAB17	ENSGGOP00000030458	ENSGGOP00000014720	RAB18, member RAS oncogene family.	RAB17, member RAS oncogene family.	0.450
ENSGGOP00000030458	RAB19	ENSGGOP00000030458	ENSGGOP00000020989	RAB18, member RAS oncogene family.	RAB19, member RAS oncogene family.	0.493
ENSGGOP00000030458	RAB1A	ENSGGOP00000030458	ENSGGOP00000037733	RAB18, member RAS oncogene family.	RAB1A, member RAS oncogene family.	0.415
ENSGGOP00000030458	RAB21	ENSGGOP00000030458	ENSGGOP00000036480	RAB18, member RAS oncogene family.	RAB21, member RAS oncogene family.	0.505
ENSGGOP00000030458	RAB22A	ENSGGOP00000030458	ENSGGOP00000015151	RAB18, member RAS oncogene family.	RAB22A, member RAS oncogene family.	0.417
ENSGGOP00000030458	RAB24	ENSGGOP00000030458	ENSGGOP00000018644	RAB18, member RAS oncogene family.	RAB24, member RAS oncogene family.	0.438
ENSGGOP00000030458	RAB2A	ENSGGOP00000030458	ENSGGOP00000033704	RAB18, member RAS oncogene family.	RAB2A, member RAS oncogene family.	0.610
ENSGGOP00000030458	RAB2B	ENSGGOP00000030458	ENSGGOP00000035696	RAB18, member RAS oncogene family.	RAB2B, member RAS oncogene family.	0.532
ENSGGOP00000030458	RAB30	ENSGGOP00000030458	ENSGGOP00000016743	RAB18, member RAS oncogene family.	RAB30, member RAS oncogene family.	0.453
ENSGGOP00000030458	RAB31	ENSGGOP00000030458	ENSGGOP00000027737	RAB18, member RAS oncogene family.	RAB31, member RAS oncogene family.	0.421
ENSGGOP00000030458	RAB36	ENSGGOP00000030458	ENSGGOP00000043946	RAB18, member RAS oncogene family.	RAB36, member RAS oncogene family.	0.566
ENSGGOP00000030458	RAB41	ENSGGOP00000030458	ENSGGOP00000006479	RAB18, member RAS oncogene family.	RAB41, member RAS oncogene family.	0.571
ENSGGOP00000030458	RAB43	ENSGGOP00000030458	ENSGGOP00000003639	RAB18, member RAS oncogene family.	RAB43, member RAS oncogene family.	0.440
ENSGGOP00000030458	RAB4A	ENSGGOP00000030458	ENSGGOP00000015336	RAB18, member RAS oncogene family.	RAB4A, member RAS oncogene family.	0.561
ENSGGOP00000030458	RAB4B	ENSGGOP00000030458	ENSGGOP00000031418	RAB18, member RAS oncogene family.	Uncharacterized protein.	0.420
ENSGGOP00000030458	RAB5A	ENSGGOP00000030458	ENSGGOP00000015584	RAB18, member RAS oncogene family.	RAB5A, member RAS oncogene family.	0.439