(12 nodes) Cold shock protein domain network (Gorilla gorilla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CSDE1	Cold shock domain containing E1. (844 aa)
	G3S8E4_GORGO	CSP domain-containing protein. (314 aa)
	LIN28A	Lin-28 homolog A. (209 aa)
	YBX3	Y-box binding protein 3. (373 aa)
	ENSGGOP00000040146	CCHC-type domain-containing protein. (203 aa)
	LIN28B	Lin-28 homolog B. (258 aa)
	YBX2	Y-box binding protein 2. (374 aa)
	CARHSP1	Calcium regulated heat stable protein 1. (147 aa)
	YBX1	Y-box binding protein 1. (324 aa)
	ENSGGOP00000044650	Cold shock domain containing C2. (153 aa)
	G3RT71_GORGO	CSD_1 domain-containing protein. (318 aa)
	G3S2R7_GORGO	CSP domain-containing protein. (280 aa)

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	LIN28B	ENSGGOP00000044717	ENSGGOP00000040021	Cold shock domain containing E1.	Lin-28 homolog B.	0.411
G3RT71_GORGO	G3S2R7_GORGO	ENSGGOP00000018996	ENSGGOP00000022365	CSD_1 domain-containing protein.	CSP domain-containing protein.	0.547
G3RT71_GORGO	G3S8E4_GORGO	ENSGGOP00000018996	ENSGGOP00000024357	CSD_1 domain-containing protein.	CSP domain-containing protein.	0.545
G3RT71_GORGO	YBX1	ENSGGOP00000018996	ENSGGOP00000004660	CSD_1 domain-containing protein.	Y-box binding protein 1.	0.544
G3RT71_GORGO	YBX3	ENSGGOP00000018996	ENSGGOP00000025383	CSD_1 domain-containing protein.	Y-box binding protein 3.	0.676
G3S2R7_GORGO	G3RT71_GORGO	ENSGGOP00000022365	ENSGGOP00000018996	CSP domain-containing protein.	CSD_1 domain-containing protein.	0.547
G3S2R7_GORGO	G3S8E4_GORGO	ENSGGOP00000022365	ENSGGOP00000024357	CSP domain-containing protein.	CSP domain-containing protein.	0.544
G3S2R7_GORGO	YBX1	ENSGGOP00000022365	ENSGGOP00000004660	CSP domain-containing protein.	Y-box binding protein 1.	0.544
G3S2R7_GORGO	YBX3	ENSGGOP00000022365	ENSGGOP00000025383	CSP domain-containing protein.	Y-box binding protein 3.	0.643
G3S8E4_GORGO	G3RT71_GORGO	ENSGGOP00000024357	ENSGGOP00000018996	CSP domain-containing protein.	CSD_1 domain-containing protein.	0.545
G3S8E4_GORGO	G3S2R7_GORGO	ENSGGOP00000024357	ENSGGOP00000022365	CSP domain-containing protein.	CSP domain-containing protein.	0.544
G3S8E4_GORGO	YBX1	ENSGGOP00000024357	ENSGGOP00000004660	CSP domain-containing protein.	Y-box binding protein 1.	0.543
G3S8E4_GORGO	YBX3	ENSGGOP00000024357	ENSGGOP00000025383	CSP domain-containing protein.	Y-box binding protein 3.	0.681
LIN28B	CSDE1	ENSGGOP00000040021	ENSGGOP00000044717	Lin-28 homolog B.	Cold shock domain containing E1.	0.411
LIN28B	YBX3	ENSGGOP00000040021	ENSGGOP00000025383	Lin-28 homolog B.	Y-box binding protein 3.	0.432
YBX1	G3RT71_GORGO	ENSGGOP00000004660	ENSGGOP00000018996	Y-box binding protein 1.	CSD_1 domain-containing protein.	0.544
YBX1	G3S2R7_GORGO	ENSGGOP00000004660	ENSGGOP00000022365	Y-box binding protein 1.	CSP domain-containing protein.	0.544
YBX1	G3S8E4_GORGO	ENSGGOP00000004660	ENSGGOP00000024357	Y-box binding protein 1.	CSP domain-containing protein.	0.543
YBX1	YBX3	ENSGGOP00000004660	ENSGGOP00000025383	Y-box binding protein 1.	Y-box binding protein 3.	0.679
YBX3	G3RT71_GORGO	ENSGGOP00000025383	ENSGGOP00000018996	Y-box binding protein 3.	CSD_1 domain-containing protein.	0.676