9 items (Pan paniscus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NR1D1	Nuclear receptor subfamily 1 group D member 1. (614 aa)
	PER3	Period circadian regulator 3. (1211 aa)
	ARNTL	Aryl hydrocarbon receptor nuclear translocator like. (628 aa)
	CRY1	Cryptochrome circadian regulator 1. (586 aa)
	OPN4	Opsin 4. (499 aa)
	CRY2	Cryptochrome circadian regulator 2. (614 aa)
	NPAS2	Neuronal PAS domain protein 2. (827 aa)
	CLOCK	Clock circadian regulator. (847 aa)
	PER2	Period circadian regulator 2. (1255 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL	CLOCK	ENSPPAP00000003288	ENSPPAP00000012930	Aryl hydrocarbon receptor nuclear translocator like.	Clock circadian regulator.	0.999
ARNTL	CRY1	ENSPPAP00000003288	ENSPPAP00000003201	Aryl hydrocarbon receptor nuclear translocator like.	Cryptochrome circadian regulator 1.	0.998
ARNTL	CRY2	ENSPPAP00000003288	ENSPPAP00000021123	Aryl hydrocarbon receptor nuclear translocator like.	Cryptochrome circadian regulator 2.	0.996
ARNTL	NPAS2	ENSPPAP00000003288	ENSPPAP00000018292	Aryl hydrocarbon receptor nuclear translocator like.	Neuronal PAS domain protein 2.	0.997
ARNTL	NR1D1	ENSPPAP00000003288	ENSPPAP00000040506	Aryl hydrocarbon receptor nuclear translocator like.	Nuclear receptor subfamily 1 group D member 1.	0.845
ARNTL	OPN4	ENSPPAP00000003288	ENSPPAP00000037826	Aryl hydrocarbon receptor nuclear translocator like.	Opsin 4.	0.499
ARNTL	PER2	ENSPPAP00000003288	ENSPPAP00000040648	Aryl hydrocarbon receptor nuclear translocator like.	Period circadian regulator 2.	0.990
ARNTL	PER3	ENSPPAP00000003288	ENSPPAP00000010052	Aryl hydrocarbon receptor nuclear translocator like.	Period circadian regulator 3.	0.927
CLOCK	ARNTL	ENSPPAP00000012930	ENSPPAP00000003288	Clock circadian regulator.	Aryl hydrocarbon receptor nuclear translocator like.	0.999
CLOCK	CRY1	ENSPPAP00000012930	ENSPPAP00000003201	Clock circadian regulator.	Cryptochrome circadian regulator 1.	0.997
CLOCK	CRY2	ENSPPAP00000012930	ENSPPAP00000021123	Clock circadian regulator.	Cryptochrome circadian regulator 2.	0.996
CLOCK	NPAS2	ENSPPAP00000012930	ENSPPAP00000018292	Clock circadian regulator.	Neuronal PAS domain protein 2.	0.993
CLOCK	NR1D1	ENSPPAP00000012930	ENSPPAP00000040506	Clock circadian regulator.	Nuclear receptor subfamily 1 group D member 1.	0.846
CLOCK	OPN4	ENSPPAP00000012930	ENSPPAP00000037826	Clock circadian regulator.	Opsin 4.	0.467
CLOCK	PER2	ENSPPAP00000012930	ENSPPAP00000040648	Clock circadian regulator.	Period circadian regulator 2.	0.988
CLOCK	PER3	ENSPPAP00000012930	ENSPPAP00000010052	Clock circadian regulator.	Period circadian regulator 3.	0.822
CRY1	ARNTL	ENSPPAP00000003201	ENSPPAP00000003288	Cryptochrome circadian regulator 1.	Aryl hydrocarbon receptor nuclear translocator like.	0.998
CRY1	CLOCK	ENSPPAP00000003201	ENSPPAP00000012930	Cryptochrome circadian regulator 1.	Clock circadian regulator.	0.997
CRY1	CRY2	ENSPPAP00000003201	ENSPPAP00000021123	Cryptochrome circadian regulator 1.	Cryptochrome circadian regulator 2.	0.990
CRY1	NPAS2	ENSPPAP00000003201	ENSPPAP00000018292	Cryptochrome circadian regulator 1.	Neuronal PAS domain protein 2.	0.994