(17 nodes) SNARE complex network (Pan paniscus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	YKT6	YKT6 v-SNARE homolog; Belongs to the synaptobrevin family. (166 aa)
	VTI1B	Vesicle transport through interaction with t-SNAREs 1B. (232 aa)
	STX7	Syntaxin 7; Belongs to the syntaxin family. (261 aa)
	VTI1A	Vesicle transport through interaction with t-SNAREs 1A. (185 aa)
	VAMP4	Vesicle associated membrane protein 4. (141 aa)
	NSF	N-ethylmaleimide sensitive factor, vesicle fusing ATPase. (744 aa)
	VAMP8	Vesicle associated membrane protein 8. (100 aa)
	NAPA	NSF attachment protein alpha. (295 aa)
	NAPG	NSF attachment protein gamma. (312 aa)
	STX17	Syntaxin 17; Belongs to the syntaxin family. (302 aa)
	STX16	Syntaxin 16; Belongs to the syntaxin family. (325 aa)
	STX8	Syntaxin 8. (236 aa)
	STX12	Syntaxin 12; Belongs to the syntaxin family. (276 aa)
	SNAP29	Synaptosome associated protein 29. (318 aa)
	STX10	Syntaxin 10; Belongs to the syntaxin family. (249 aa)
	STX6	Syntaxin 6; Belongs to the syntaxin family. (255 aa)
	NAPB	NSF attachment protein beta. (298 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAPA	NAPB	ENSPPAP00000020938	ENSPPAP00000042649	NSF attachment protein alpha.	NSF attachment protein beta.	0.700
NAPA	NAPG	ENSPPAP00000020938	ENSPPAP00000023217	NSF attachment protein alpha.	NSF attachment protein gamma.	0.982
NAPA	NSF	ENSPPAP00000020938	ENSPPAP00000015585	NSF attachment protein alpha.	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	0.983
NAPA	SNAP29	ENSPPAP00000020938	ENSPPAP00000038037	NSF attachment protein alpha.	Synaptosome associated protein 29.	0.875
NAPA	STX10	ENSPPAP00000020938	ENSPPAP00000038880	NSF attachment protein alpha.	Syntaxin 10; Belongs to the syntaxin family.	0.871
NAPA	STX12	ENSPPAP00000020938	ENSPPAP00000037024	NSF attachment protein alpha.	Syntaxin 12; Belongs to the syntaxin family.	0.950
NAPA	STX16	ENSPPAP00000020938	ENSPPAP00000028463	NSF attachment protein alpha.	Syntaxin 16; Belongs to the syntaxin family.	0.973
NAPA	STX17	ENSPPAP00000020938	ENSPPAP00000025716	NSF attachment protein alpha.	Syntaxin 17; Belongs to the syntaxin family.	0.910
NAPA	STX6	ENSPPAP00000020938	ENSPPAP00000040020	NSF attachment protein alpha.	Syntaxin 6; Belongs to the syntaxin family.	0.962
NAPA	STX7	ENSPPAP00000020938	ENSPPAP00000007106	NSF attachment protein alpha.	Syntaxin 7; Belongs to the syntaxin family.	0.945
NAPA	STX8	ENSPPAP00000020938	ENSPPAP00000032609	NSF attachment protein alpha.	Syntaxin 8.	0.921
NAPA	VAMP4	ENSPPAP00000020938	ENSPPAP00000011534	NSF attachment protein alpha.	Vesicle associated membrane protein 4.	0.895
NAPA	VAMP8	ENSPPAP00000020938	ENSPPAP00000015935	NSF attachment protein alpha.	Vesicle associated membrane protein 8.	0.921
NAPA	VTI1A	ENSPPAP00000020938	ENSPPAP00000007670	NSF attachment protein alpha.	Vesicle transport through interaction with t-SNAREs 1A.	0.910
NAPA	VTI1B	ENSPPAP00000020938	ENSPPAP00000005781	NSF attachment protein alpha.	Vesicle transport through interaction with t-SNAREs 1B.	0.892
NAPA	YKT6	ENSPPAP00000020938	ENSPPAP00000004719	NSF attachment protein alpha.	YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.	0.910
NAPB	NAPA	ENSPPAP00000042649	ENSPPAP00000020938	NSF attachment protein beta.	NSF attachment protein alpha.	0.700
NAPB	NAPG	ENSPPAP00000042649	ENSPPAP00000023217	NSF attachment protein beta.	NSF attachment protein gamma.	0.834
NAPB	NSF	ENSPPAP00000042649	ENSPPAP00000015585	NSF attachment protein beta.	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	0.915
NAPB	SNAP29	ENSPPAP00000042649	ENSPPAP00000038037	NSF attachment protein beta.	Synaptosome associated protein 29.	0.784