5 items (Pan paniscus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NR6A1	Nuclear receptor subfamily 6 group A member 1. (446 aa)
	SYNGAP1	Synaptic Ras GTPase activating protein 1. (1346 aa)
	CDC42SE1	CDC42 small effector 1. (79 aa)
	CUTA	Uncharacterized protein. (156 aa)
	KCNH1	Potassium voltage-gated channel subfamily H member 1. (989 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUTA	KCNH1	ENSPPAP00000028798	ENSPPAP00000039964	Uncharacterized protein.	Potassium voltage-gated channel subfamily H member 1.	0.672
CUTA	NR6A1	ENSPPAP00000028798	ENSPPAP00000008245	Uncharacterized protein.	Nuclear receptor subfamily 6 group A member 1.	0.674
CUTA	SYNGAP1	ENSPPAP00000028798	ENSPPAP00000026691	Uncharacterized protein.	Synaptic Ras GTPase activating protein 1.	0.857
KCNH1	CUTA	ENSPPAP00000039964	ENSPPAP00000028798	Potassium voltage-gated channel subfamily H member 1.	Uncharacterized protein.	0.672
KCNH1	NR6A1	ENSPPAP00000039964	ENSPPAP00000008245	Potassium voltage-gated channel subfamily H member 1.	Nuclear receptor subfamily 6 group A member 1.	0.677
KCNH1	SYNGAP1	ENSPPAP00000039964	ENSPPAP00000026691	Potassium voltage-gated channel subfamily H member 1.	Synaptic Ras GTPase activating protein 1.	0.862
NR6A1	CUTA	ENSPPAP00000008245	ENSPPAP00000028798	Nuclear receptor subfamily 6 group A member 1.	Uncharacterized protein.	0.674
NR6A1	KCNH1	ENSPPAP00000008245	ENSPPAP00000039964	Nuclear receptor subfamily 6 group A member 1.	Potassium voltage-gated channel subfamily H member 1.	0.677
NR6A1	SYNGAP1	ENSPPAP00000008245	ENSPPAP00000026691	Nuclear receptor subfamily 6 group A member 1.	Synaptic Ras GTPase activating protein 1.	0.483
SYNGAP1	CUTA	ENSPPAP00000026691	ENSPPAP00000028798	Synaptic Ras GTPase activating protein 1.	Uncharacterized protein.	0.857
SYNGAP1	KCNH1	ENSPPAP00000026691	ENSPPAP00000039964	Synaptic Ras GTPase activating protein 1.	Potassium voltage-gated channel subfamily H member 1.	0.862
SYNGAP1	NR6A1	ENSPPAP00000026691	ENSPPAP00000008245	Synaptic Ras GTPase activating protein 1.	Nuclear receptor subfamily 6 group A member 1.	0.483