11 items (Pan paniscus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRY1	Cryptochrome circadian regulator 1. (586 aa)
	ARNTL	Aryl hydrocarbon receptor nuclear translocator like. (628 aa)
	CSNK1D	Casein kinase 1 delta; Belongs to the protein kinase superfamily. (427 aa)
	FBXL3	F-box and leucine rich repeat protein 3. (428 aa)
	PER3	Period circadian regulator 3. (1211 aa)
	CLOCK	Clock circadian regulator. (847 aa)
	NPAS2	Neuronal PAS domain protein 2. (827 aa)
	CRY2	Cryptochrome circadian regulator 2. (614 aa)
	LOC100975570	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (416 aa)
	PER1	Period circadian regulator 1. (1290 aa)
	PER2	Period circadian regulator 2. (1255 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL	CLOCK	ENSPPAP00000003288	ENSPPAP00000012930	Aryl hydrocarbon receptor nuclear translocator like.	Clock circadian regulator.	0.999
ARNTL	CRY1	ENSPPAP00000003288	ENSPPAP00000003201	Aryl hydrocarbon receptor nuclear translocator like.	Cryptochrome circadian regulator 1.	0.998
ARNTL	CRY2	ENSPPAP00000003288	ENSPPAP00000021123	Aryl hydrocarbon receptor nuclear translocator like.	Cryptochrome circadian regulator 2.	0.996
ARNTL	CSNK1D	ENSPPAP00000003288	ENSPPAP00000006212	Aryl hydrocarbon receptor nuclear translocator like.	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	0.981
ARNTL	FBXL3	ENSPPAP00000003288	ENSPPAP00000009261	Aryl hydrocarbon receptor nuclear translocator like.	F-box and leucine rich repeat protein 3.	0.745
ARNTL	LOC100975570	ENSPPAP00000003288	ENSPPAP00000022949	Aryl hydrocarbon receptor nuclear translocator like.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.988
ARNTL	NPAS2	ENSPPAP00000003288	ENSPPAP00000018292	Aryl hydrocarbon receptor nuclear translocator like.	Neuronal PAS domain protein 2.	0.997
ARNTL	PER1	ENSPPAP00000003288	ENSPPAP00000036029	Aryl hydrocarbon receptor nuclear translocator like.	Period circadian regulator 1.	0.897
ARNTL	PER2	ENSPPAP00000003288	ENSPPAP00000040648	Aryl hydrocarbon receptor nuclear translocator like.	Period circadian regulator 2.	0.990
ARNTL	PER3	ENSPPAP00000003288	ENSPPAP00000010052	Aryl hydrocarbon receptor nuclear translocator like.	Period circadian regulator 3.	0.927
CLOCK	ARNTL	ENSPPAP00000012930	ENSPPAP00000003288	Clock circadian regulator.	Aryl hydrocarbon receptor nuclear translocator like.	0.999
CLOCK	CRY1	ENSPPAP00000012930	ENSPPAP00000003201	Clock circadian regulator.	Cryptochrome circadian regulator 1.	0.997
CLOCK	CRY2	ENSPPAP00000012930	ENSPPAP00000021123	Clock circadian regulator.	Cryptochrome circadian regulator 2.	0.996
CLOCK	CSNK1D	ENSPPAP00000012930	ENSPPAP00000006212	Clock circadian regulator.	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	0.971
CLOCK	FBXL3	ENSPPAP00000012930	ENSPPAP00000009261	Clock circadian regulator.	F-box and leucine rich repeat protein 3.	0.757
CLOCK	LOC100975570	ENSPPAP00000012930	ENSPPAP00000022949	Clock circadian regulator.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.975
CLOCK	NPAS2	ENSPPAP00000012930	ENSPPAP00000018292	Clock circadian regulator.	Neuronal PAS domain protein 2.	0.993
CLOCK	PER1	ENSPPAP00000012930	ENSPPAP00000036029	Clock circadian regulator.	Period circadian regulator 1.	0.780
CLOCK	PER2	ENSPPAP00000012930	ENSPPAP00000040648	Clock circadian regulator.	Period circadian regulator 2.	0.988
CLOCK	PER3	ENSPPAP00000012930	ENSPPAP00000010052	Clock circadian regulator.	Period circadian regulator 3.	0.822