STRINGSTRING
ZGRF1 ZGRF1 SLX1A SLX1A DFFB DFFB DNASE1L1 DNASE1L1 ENSPPAP00000004806 ENSPPAP00000004806 MUS81 MUS81 RBBP8 RBBP8 FEN1 FEN1 GEN1 GEN1 RPS3 RPS3 ZRANB3 ZRANB3 DNASE2B DNASE2B ENSPPAP00000016638 ENSPPAP00000016638 ENSPPAP00000016729 ENSPPAP00000016729 EXOG EXOG APLF APLF ENSPPAP00000020965 ENSPPAP00000020965 DNASE2 DNASE2 ENDOV ENDOV MRE11 MRE11 DICER1 DICER1 DNASE1 DNASE1 RAD51C RAD51C ERCC4 ERCC4 MBD4 MBD4 DNA2 DNA2 DNASE1L2 DNASE1L2 ANKLE1 ANKLE1 EXO1 EXO1 APEX1 APEX1 ENSPPAP00000033446 ENSPPAP00000033446 SETMAR SETMAR ENDOG ENDOG FAN1 FAN1 DCLRE1C DCLRE1C FEN1-2 FEN1-2 DNASE1L3 DNASE1L3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ZGRF1Zinc finger GRF-type containing 1. (2103 aa)
SLX1AStructure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products. (275 aa)
DFFBDNA fragmentation factor subunit beta. (362 aa)
DNASE1L1Deoxyribonuclease; Belongs to the DNase I family. (302 aa)
ENSPPAP00000004806Uncharacterized protein. (142 aa)
MUS81MUS81 structure-specific endonuclease subunit. (551 aa)
RBBP8RB binding protein 8, endonuclease. (895 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (908 aa)
RPS3Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (243 aa)
ZRANB3Zinc finger RANBP2-type containing 3. (1078 aa)
DNASE2BDeoxyribonuclease 2 beta. (361 aa)
ENSPPAP00000016638Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (612 aa)
ENSPPAP00000016729Ribosomal_S3_C domain-containing protein. (100 aa)
EXOGExo/endonuclease G. (368 aa)
APLFAprataxin and PNKP like factor. (511 aa)
ENSPPAP00000020965KH type-2 domain-containing protein. (250 aa)
DNASE2Deoxyribonuclease 2, lysosomal. (360 aa)
ENDOVEndonuclease V. (309 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (692 aa)
DICER1Dicer 1, ribonuclease III; Belongs to the helicase family. Dicer subfamily. (1922 aa)
DNASE1Deoxyribonuclease; Belongs to the DNase I family. (282 aa)
RAD51CRAD51 paralog C. (376 aa)
ERCC4ERCC excision repair 4, endonuclease catalytic subunit. (916 aa)
MBD4Methyl-CpG-binding domain protein 4; Mismatch-specific DNA N-glycosylase involved in DNA repair. Has thymine glycosylase activity and is specific for G:T mismatches within methylated and unmethylated CpG sites. Can also remove uracil or 5-fluorouracil in G:U mismatches. Has no lyase activity. Was first identified as methyl-CpG-binding protein. (574 aa)
DNA2DNA replication helicase/nuclease 2. (1060 aa)
DNASE1L2Deoxyribonuclease; Belongs to the DNase I family. (299 aa)
ANKLE1Ankyrin repeat and LEM domain containing 1. (669 aa)
EXO1Exonuclease 1. (846 aa)
APEX1DNA-(apurinic or apyrimidinic site) lyase, mitochondrial; Multifunctional protein that plays a central role in the cellular response to oxidative stress. The two major activities of APEX1 are DNA repair and redox regulation of transcriptional factors. Functions as a apurinic/apyrimidinic (AP) endodeoxyribonuclease in the DNA base excision repair (BER) pathway of DNA lesions induced by oxidative and alkylating agents. Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break w [...] (318 aa)
ENSPPAP00000033446KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (253 aa)
SETMARSET domain and mariner transposase fusion gene. (684 aa)
ENDOGEndonuclease. (188 aa)
FAN1Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (1017 aa)
DCLRE1CDNA cross-link repair 1C. (590 aa)
FEN1-2Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (308 aa)
DNASE1L3Deoxyribonuclease; Belongs to the DNase I family. (305 aa)
Your Current Organism:
Pan paniscus
NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee
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