11 items (Pan paniscus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ERCC2	ERCC excision repair 2, TFIIH core complex helicase subunit. (760 aa)
	ERCC6	ERCC excision repair 6, chromatin remodeling factor. (1491 aa)
	ERCC8	ERCC excision repair 8, CSA ubiquitin ligase complex subunit. (396 aa)
	ENSPPAP00000012418	Uncharacterized protein. (412 aa)
	ENSPPAP00000018389	Uncharacterized protein. (112 aa)
	POLR2I	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	ERCC3	ERCC excision repair 3, TFIIH core complex helicase subunit. (782 aa)
	USP7	Ubiquitin specific peptidase 7; Belongs to the peptidase C19 family. (1109 aa)
	UVSSA	UV stimulated scaffold protein A. (709 aa)
	ENSPPAP00000039593	Uncharacterized protein. (103 aa)
	XAB2	XPA binding protein 2. (855 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPPAP00000012418	ERCC6	ENSPPAP00000012418	ENSPPAP00000001806	Uncharacterized protein.	ERCC excision repair 6, chromatin remodeling factor.	0.664
ENSPPAP00000012418	ERCC8	ENSPPAP00000012418	ENSPPAP00000012407	Uncharacterized protein.	ERCC excision repair 8, CSA ubiquitin ligase complex subunit.	0.494
ENSPPAP00000012418	UVSSA	ENSPPAP00000012418	ENSPPAP00000032554	Uncharacterized protein.	UV stimulated scaffold protein A.	0.983
ENSPPAP00000018389	ERCC6	ENSPPAP00000018389	ENSPPAP00000001806	Uncharacterized protein.	ERCC excision repair 6, chromatin remodeling factor.	0.700
ENSPPAP00000039593	ERCC6	ENSPPAP00000039593	ENSPPAP00000001806	Uncharacterized protein.	ERCC excision repair 6, chromatin remodeling factor.	0.625
ERCC2	ERCC3	ENSPPAP00000042917	ENSPPAP00000026079	ERCC excision repair 2, TFIIH core complex helicase subunit.	ERCC excision repair 3, TFIIH core complex helicase subunit.	0.999
ERCC2	ERCC6	ENSPPAP00000042917	ENSPPAP00000001806	ERCC excision repair 2, TFIIH core complex helicase subunit.	ERCC excision repair 6, chromatin remodeling factor.	0.925
ERCC2	ERCC8	ENSPPAP00000042917	ENSPPAP00000012407	ERCC excision repair 2, TFIIH core complex helicase subunit.	ERCC excision repair 8, CSA ubiquitin ligase complex subunit.	0.845
ERCC2	POLR2I	ENSPPAP00000042917	ENSPPAP00000020448	ERCC excision repair 2, TFIIH core complex helicase subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.944
ERCC2	UVSSA	ENSPPAP00000042917	ENSPPAP00000032554	ERCC excision repair 2, TFIIH core complex helicase subunit.	UV stimulated scaffold protein A.	0.596
ERCC2	XAB2	ENSPPAP00000042917	ENSPPAP00000041208	ERCC excision repair 2, TFIIH core complex helicase subunit.	XPA binding protein 2.	0.698
ERCC3	ERCC2	ENSPPAP00000026079	ENSPPAP00000042917	ERCC excision repair 3, TFIIH core complex helicase subunit.	ERCC excision repair 2, TFIIH core complex helicase subunit.	0.999
ERCC3	ERCC6	ENSPPAP00000026079	ENSPPAP00000001806	ERCC excision repair 3, TFIIH core complex helicase subunit.	ERCC excision repair 6, chromatin remodeling factor.	0.893
ERCC3	ERCC8	ENSPPAP00000026079	ENSPPAP00000012407	ERCC excision repair 3, TFIIH core complex helicase subunit.	ERCC excision repair 8, CSA ubiquitin ligase complex subunit.	0.857
ERCC3	POLR2I	ENSPPAP00000026079	ENSPPAP00000020448	ERCC excision repair 3, TFIIH core complex helicase subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.932
ERCC3	UVSSA	ENSPPAP00000026079	ENSPPAP00000032554	ERCC excision repair 3, TFIIH core complex helicase subunit.	UV stimulated scaffold protein A.	0.651
ERCC3	XAB2	ENSPPAP00000026079	ENSPPAP00000041208	ERCC excision repair 3, TFIIH core complex helicase subunit.	XPA binding protein 2.	0.691
ERCC6	ENSPPAP00000012418	ENSPPAP00000001806	ENSPPAP00000012418	ERCC excision repair 6, chromatin remodeling factor.	Uncharacterized protein.	0.664
ERCC6	ENSPPAP00000018389	ENSPPAP00000001806	ENSPPAP00000018389	ERCC excision repair 6, chromatin remodeling factor.	Uncharacterized protein.	0.700
ERCC6	ENSPPAP00000039593	ENSPPAP00000001806	ENSPPAP00000039593	ERCC excision repair 6, chromatin remodeling factor.	Uncharacterized protein.	0.625