(29 nodes) Cerebellar cortex formation network (Pan paniscus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPPAP00000024034	Uncharacterized protein. (541 aa)
	CDK5	Cyclin dependent kinase 5; Belongs to the protein kinase superfamily. (320 aa)
	LHX5	LIM homeobox 5. (402 aa)
	ENSPPAP00000019516	Uncharacterized protein. (149 aa)
	WNT7A	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (349 aa)
	GRID2	Glutamate ionotropic receptor delta type subunit 2. (1007 aa)
	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. (4760 aa)
	ENSPPAP00000009275	Uncharacterized protein. (269 aa)
	ENSPPAP00000006969	Uncharacterized protein. (584 aa)
	LDB1	LIM domain binding 1. (410 aa)
	OPHN1	Oligophrenin 1. (802 aa)
	CEND1	Cell cycle exit and neuronal differentiation 1. (149 aa)
	AGTPBP1	ATP/GTP binding protein 1. (1248 aa)
	FAIM2	Fas apoptotic inhibitory molecule 2; Belongs to the BI1 family. (316 aa)
	SLC25A46	Solute carrier family 25 member 46; Belongs to the mitochondrial carrier (TC 2.A.29) family. (418 aa)
	ATP7A	ATPase copper transporting alpha. (1500 aa)
	MTPN	Myotrophin. (118 aa)
	LHX1	LIM homeobox 1. (406 aa)
	NRXN1	Neurexin 1. (1445 aa)
	TTLL1	Tubulin tyrosine ligase like 1. (423 aa)
	WHRN	Whirlin. (906 aa)
	KNDC1	Kinase non-catalytic C-lobe domain containing 1. (1754 aa)
	RORA	RAR related orphan receptor A. (559 aa)
	ENSPPAP00000029143	Uncharacterized protein. (511 aa)
	TTC21B	Tetratricopeptide repeat domain 21B. (1316 aa)
	DLL1	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (624 aa)
	CBLN1	Cerebellin 1 precursor. (168 aa)
	PTPN11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	PROX1	Prospero homeobox 1. (737 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGTPBP1	TTLL1	ENSPPAP00000042805	ENSPPAP00000034119	ATP/GTP binding protein 1.	Tubulin tyrosine ligase like 1.	0.459
CBLN1	GRID2	ENSPPAP00000027987	ENSPPAP00000011888	Cerebellin 1 precursor.	Glutamate ionotropic receptor delta type subunit 2.	0.905
CBLN1	NRXN1	ENSPPAP00000027987	ENSPPAP00000034598	Cerebellin 1 precursor.	Neurexin 1.	0.901
GRID2	CBLN1	ENSPPAP00000011888	ENSPPAP00000027987	Glutamate ionotropic receptor delta type subunit 2.	Cerebellin 1 precursor.	0.905
GRID2	NRXN1	ENSPPAP00000011888	ENSPPAP00000034598	Glutamate ionotropic receptor delta type subunit 2.	Neurexin 1.	0.803
LDB1	LHX1	ENSPPAP00000005997	ENSPPAP00000036153	LIM domain binding 1.	LIM homeobox 1.	0.521
LDB1	LHX5	ENSPPAP00000005997	ENSPPAP00000020969	LIM domain binding 1.	LIM homeobox 5.	0.521
LHX1	LDB1	ENSPPAP00000036153	ENSPPAP00000005997	LIM homeobox 1.	LIM domain binding 1.	0.521
LHX5	LDB1	ENSPPAP00000020969	ENSPPAP00000005997	LIM homeobox 5.	LIM domain binding 1.	0.521
NRXN1	CBLN1	ENSPPAP00000034598	ENSPPAP00000027987	Neurexin 1.	Cerebellin 1 precursor.	0.901
NRXN1	GRID2	ENSPPAP00000034598	ENSPPAP00000011888	Neurexin 1.	Glutamate ionotropic receptor delta type subunit 2.	0.803
TTC21B	WHRN	ENSPPAP00000028462	ENSPPAP00000032886	Tetratricopeptide repeat domain 21B.	Whirlin.	0.844
TTLL1	AGTPBP1	ENSPPAP00000034119	ENSPPAP00000042805	Tubulin tyrosine ligase like 1.	ATP/GTP binding protein 1.	0.459
WHRN	TTC21B	ENSPPAP00000032886	ENSPPAP00000028462	Whirlin.	Tetratricopeptide repeat domain 21B.	0.844