4 items (Pan paniscus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POP1	POP1 homolog, ribonuclease P/MRP subunit. (1023 aa)
	RPP30	Ribonuclease P/MRP subunit p30. (318 aa)
	POP5	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (163 aa)
	C15orf40	Chromosome 15 open reading frame 40. (160 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
POP1	POP5	ENSPPAP00000004379	ENSPPAP00000042279	POP1 homolog, ribonuclease P/MRP subunit.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.999
POP1	RPP30	ENSPPAP00000004379	ENSPPAP00000042419	POP1 homolog, ribonuclease P/MRP subunit.	Ribonuclease P/MRP subunit p30.	0.999
POP5	POP1	ENSPPAP00000042279	ENSPPAP00000004379	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	POP1 homolog, ribonuclease P/MRP subunit.	0.999
POP5	RPP30	ENSPPAP00000042279	ENSPPAP00000042419	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Ribonuclease P/MRP subunit p30.	0.999
RPP30	POP1	ENSPPAP00000042419	ENSPPAP00000004379	Ribonuclease P/MRP subunit p30.	POP1 homolog, ribonuclease P/MRP subunit.	0.999
RPP30	POP5	ENSPPAP00000042419	ENSPPAP00000042279	Ribonuclease P/MRP subunit p30.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.999