(17 nodes) T-box superfamily network (Pan paniscus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBX6	T-box transcription factor 6. (443 aa)
	TBR1	Uncharacterized protein. (231 aa)
	TBX4	T-box transcription factor 4. (545 aa)
	TBX22	T-box transcription factor 22. (520 aa)
	TBX18	T-box transcription factor 18. (607 aa)
	TBX3	T-box transcription factor 3. (723 aa)
	TBX15	T-box transcription factor 15. (559 aa)
	MGA	MAX dimerization protein MGA. (3068 aa)
	EOMES	Eomesodermin. (680 aa)
	TBX21	T-box transcription factor 21. (494 aa)
	TBX20	Uncharacterized protein. (379 aa)
	TBX1	Uncharacterized protein. (447 aa)
	TBX19	T-box transcription factor 19. (448 aa)
	TBX2	T-box transcription factor 2. (622 aa)
	TBXT	T-box transcription factor T. (435 aa)
	TBX10	T-box transcription factor 10. (387 aa)
	TBX5	T-box transcription factor 5. (518 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EOMES	TBX19	ENSPPAP00000022091	ENSPPAP00000018022	Eomesodermin.	T-box transcription factor 19.	0.537
EOMES	TBX21	ENSPPAP00000022091	ENSPPAP00000021535	Eomesodermin.	T-box transcription factor 21.	0.470
EOMES	TBXT	ENSPPAP00000022091	ENSPPAP00000014094	Eomesodermin.	T-box transcription factor T.	0.899
TBR1	TBX19	ENSPPAP00000006595	ENSPPAP00000018022	Uncharacterized protein.	T-box transcription factor 19.	0.501
TBR1	TBX21	ENSPPAP00000006595	ENSPPAP00000021535	Uncharacterized protein.	T-box transcription factor 21.	0.410
TBR1	TBXT	ENSPPAP00000006595	ENSPPAP00000014094	Uncharacterized protein.	T-box transcription factor T.	0.595
TBX10	TBX19	ENSPPAP00000014046	ENSPPAP00000018022	T-box transcription factor 10.	T-box transcription factor 19.	0.431
TBX10	TBX21	ENSPPAP00000014046	ENSPPAP00000021535	T-box transcription factor 10.	T-box transcription factor 21.	0.438
TBX10	TBXT	ENSPPAP00000014046	ENSPPAP00000014094	T-box transcription factor 10.	T-box transcription factor T.	0.431
TBX19	EOMES	ENSPPAP00000018022	ENSPPAP00000022091	T-box transcription factor 19.	Eomesodermin.	0.537
TBX19	TBR1	ENSPPAP00000018022	ENSPPAP00000006595	T-box transcription factor 19.	Uncharacterized protein.	0.501
TBX19	TBX10	ENSPPAP00000018022	ENSPPAP00000014046	T-box transcription factor 19.	T-box transcription factor 10.	0.431
TBX19	TBX6	ENSPPAP00000018022	ENSPPAP00000010907	T-box transcription factor 19.	T-box transcription factor 6.	0.438
TBX2	TBX5	ENSPPAP00000015093	ENSPPAP00000012540	T-box transcription factor 2.	T-box transcription factor 5.	0.416
TBX21	EOMES	ENSPPAP00000021535	ENSPPAP00000022091	T-box transcription factor 21.	Eomesodermin.	0.470
TBX21	TBR1	ENSPPAP00000021535	ENSPPAP00000006595	T-box transcription factor 21.	Uncharacterized protein.	0.410
TBX21	TBX10	ENSPPAP00000021535	ENSPPAP00000014046	T-box transcription factor 21.	T-box transcription factor 10.	0.438
TBX21	TBX6	ENSPPAP00000021535	ENSPPAP00000010907	T-box transcription factor 21.	T-box transcription factor 6.	0.435
TBX3	TBX5	ENSPPAP00000010916	ENSPPAP00000012540	T-box transcription factor 3.	T-box transcription factor 5.	0.659
TBX5	TBX2	ENSPPAP00000012540	ENSPPAP00000015093	T-box transcription factor 5.	T-box transcription factor 2.	0.416