26 items (Pan paniscus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MMAB	Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (244 aa)
	LMBRD1	LMBR1 domain containing 1. (540 aa)
	CUBN	Cubilin. (3623 aa)
	MMAA	Metabolism of cobalamin associated A. (418 aa)
	CD320	CD320 molecule. (282 aa)
	MMADHC	Metabolism of cobalamin associated D. (330 aa)
	AIG1	Androgen induced 1. (245 aa)
	LOC100969990	Uncharacterized protein. (659 aa)
	LDLRAP1	Low density lipoprotein receptor adaptor protein 1. (295 aa)
	ANKRD16	Ankyrin repeat domain 16. (360 aa)
	MTR	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1232 aa)
	MTRR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase. (725 aa)
	MMACHC	Metabolism of cobalamin associated C. (282 aa)
	TCN2	Transcobalamin 2. (427 aa)
	TCN1	Transcobalamin 1. (433 aa)
	LRP2	LDL receptor related protein 2. (4641 aa)
	ABCD4	ATP binding cassette subfamily D member 4. (606 aa)
	MINDY2	MINDY lysine 48 deubiquitinase 2. (621 aa)
	MINDY1	MINDY lysine 48 deubiquitinase 1. (517 aa)
	CBLIF	Cobalamin binding intrinsic factor. (417 aa)
	CTRB2	Chymotrypsinogen B2; Belongs to the peptidase S1 family. (263 aa)
	CDCP2	CUB domain containing protein 2. (540 aa)
	MMUT	Methylmalonyl-CoA mutase. (750 aa)
	CTRB1	Chymotrypsinogen B1; Belongs to the peptidase S1 family. (263 aa)
	AMN	Amnion associated transmembrane protein. (385 aa)
	ADTRP	Androgen dependent TFPI regulating protein. (231 aa)

Your Current Organism:

Pan paniscus

NCBI taxonomy Id: 9597
Other names: P. paniscus, bonobo, pygmy chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCD4	CD320	ENSPPAP00000037208	ENSPPAP00000017083	ATP binding cassette subfamily D member 4.	CD320 molecule.	0.463
ABCD4	LMBRD1	ENSPPAP00000037208	ENSPPAP00000018503	ATP binding cassette subfamily D member 4.	LMBR1 domain containing 1.	0.968
ABCD4	MMAA	ENSPPAP00000037208	ENSPPAP00000017321	ATP binding cassette subfamily D member 4.	Metabolism of cobalamin associated A.	0.453
ABCD4	MMAB	ENSPPAP00000037208	ENSPPAP00000018668	ATP binding cassette subfamily D member 4.	Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.	0.453
ABCD4	MMACHC	ENSPPAP00000037208	ENSPPAP00000040055	ATP binding cassette subfamily D member 4.	Metabolism of cobalamin associated C.	0.557
ABCD4	MMADHC	ENSPPAP00000037208	ENSPPAP00000013153	ATP binding cassette subfamily D member 4.	Metabolism of cobalamin associated D.	0.548
ABCD4	MMUT	ENSPPAP00000037208	ENSPPAP00000022971	ATP binding cassette subfamily D member 4.	Methylmalonyl-CoA mutase.	0.475
ABCD4	MTR	ENSPPAP00000037208	ENSPPAP00000000595	ATP binding cassette subfamily D member 4.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.424
AMN	CBLIF	ENSPPAP00000019656	ENSPPAP00000028197	Amnion associated transmembrane protein.	Cobalamin binding intrinsic factor.	0.769
AMN	CDCP2	ENSPPAP00000019656	ENSPPAP00000026136	Amnion associated transmembrane protein.	CUB domain containing protein 2.	0.827
AMN	CUBN	ENSPPAP00000019656	ENSPPAP00000018422	Amnion associated transmembrane protein.	Cubilin.	0.999
AMN	LRP2	ENSPPAP00000019656	ENSPPAP00000038526	Amnion associated transmembrane protein.	LDL receptor related protein 2.	0.921
AMN	TCN1	ENSPPAP00000019656	ENSPPAP00000039080	Amnion associated transmembrane protein.	Transcobalamin 1.	0.553
AMN	TCN2	ENSPPAP00000019656	ENSPPAP00000040861	Amnion associated transmembrane protein.	Transcobalamin 2.	0.594
CBLIF	AMN	ENSPPAP00000028197	ENSPPAP00000019656	Cobalamin binding intrinsic factor.	Amnion associated transmembrane protein.	0.769
CBLIF	CD320	ENSPPAP00000028197	ENSPPAP00000017083	Cobalamin binding intrinsic factor.	CD320 molecule.	0.498
CBLIF	CDCP2	ENSPPAP00000028197	ENSPPAP00000026136	Cobalamin binding intrinsic factor.	CUB domain containing protein 2.	0.576
CBLIF	CUBN	ENSPPAP00000028197	ENSPPAP00000018422	Cobalamin binding intrinsic factor.	Cubilin.	0.997
CBLIF	LDLRAP1	ENSPPAP00000028197	ENSPPAP00000006982	Cobalamin binding intrinsic factor.	Low density lipoprotein receptor adaptor protein 1.	0.559
CBLIF	LRP2	ENSPPAP00000028197	ENSPPAP00000038526	Cobalamin binding intrinsic factor.	LDL receptor related protein 2.	0.665