5 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUPD1	Dual specificity phosphatase DUPD1; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (220 aa)
	PEBP1	Phosphatidylethanolamine binding protein 1. (187 aa)
	FKBP1A	Peptidylprolyl isomerase. (139 aa)
	MYL6B	Myosin light chain 6B. (210 aa)
	FKBP1A-2	FK506 binding protein 1A, 12kDa. (91 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUPD1	FKBP1A	ENSPTRP00000004609	ENSPTRP00000022531	Dual specificity phosphatase DUPD1; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Peptidylprolyl isomerase.	0.703
DUPD1	FKBP1A-2	ENSPTRP00000004609	ENSPTRP00000091152	Dual specificity phosphatase DUPD1; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	FK506 binding protein 1A, 12kDa.	0.580
FKBP1A	DUPD1	ENSPTRP00000022531	ENSPTRP00000004609	Peptidylprolyl isomerase.	Dual specificity phosphatase DUPD1; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.703
FKBP1A	MYL6B	ENSPTRP00000022531	ENSPTRP00000074373	Peptidylprolyl isomerase.	Myosin light chain 6B.	0.795
FKBP1A	PEBP1	ENSPTRP00000022531	ENSPTRP00000009358	Peptidylprolyl isomerase.	Phosphatidylethanolamine binding protein 1.	0.665
FKBP1A-2	DUPD1	ENSPTRP00000091152	ENSPTRP00000004609	FK506 binding protein 1A, 12kDa.	Dual specificity phosphatase DUPD1; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.580
FKBP1A-2	MYL6B	ENSPTRP00000091152	ENSPTRP00000074373	FK506 binding protein 1A, 12kDa.	Myosin light chain 6B.	0.633
FKBP1A-2	PEBP1	ENSPTRP00000091152	ENSPTRP00000009358	FK506 binding protein 1A, 12kDa.	Phosphatidylethanolamine binding protein 1.	0.495
MYL6B	FKBP1A	ENSPTRP00000074373	ENSPTRP00000022531	Myosin light chain 6B.	Peptidylprolyl isomerase.	0.795
MYL6B	FKBP1A-2	ENSPTRP00000074373	ENSPTRP00000091152	Myosin light chain 6B.	FK506 binding protein 1A, 12kDa.	0.633
MYL6B	PEBP1	ENSPTRP00000074373	ENSPTRP00000009358	Myosin light chain 6B.	Phosphatidylethanolamine binding protein 1.	0.727
PEBP1	FKBP1A	ENSPTRP00000009358	ENSPTRP00000022531	Phosphatidylethanolamine binding protein 1.	Peptidylprolyl isomerase.	0.665
PEBP1	FKBP1A-2	ENSPTRP00000009358	ENSPTRP00000091152	Phosphatidylethanolamine binding protein 1.	FK506 binding protein 1A, 12kDa.	0.495
PEBP1	MYL6B	ENSPTRP00000009358	ENSPTRP00000074373	Phosphatidylethanolamine binding protein 1.	Myosin light chain 6B.	0.727