5 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBR1	T-box brain transcription factor 1. (682 aa)
	EMX1	Empty spiracles homeobox 1. (290 aa)
	FEZF2	FEZ family zinc finger 2. (463 aa)
	SATB2	DNA-binding protein SATB. (733 aa)
	CUX2	Homeobox protein cut-like. (1489 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUX2	EMX1	ENSPTRP00000089985	ENSPTRP00000057829	Homeobox protein cut-like.	Empty spiracles homeobox 1.	0.469
CUX2	FEZF2	ENSPTRP00000089985	ENSPTRP00000079962	Homeobox protein cut-like.	FEZ family zinc finger 2.	0.604
CUX2	SATB2	ENSPTRP00000089985	ENSPTRP00000080249	Homeobox protein cut-like.	DNA-binding protein SATB.	0.552
CUX2	TBR1	ENSPTRP00000089985	ENSPTRP00000046292	Homeobox protein cut-like.	T-box brain transcription factor 1.	0.498
EMX1	CUX2	ENSPTRP00000057829	ENSPTRP00000089985	Empty spiracles homeobox 1.	Homeobox protein cut-like.	0.469
EMX1	FEZF2	ENSPTRP00000057829	ENSPTRP00000079962	Empty spiracles homeobox 1.	FEZ family zinc finger 2.	0.597
EMX1	SATB2	ENSPTRP00000057829	ENSPTRP00000080249	Empty spiracles homeobox 1.	DNA-binding protein SATB.	0.475
EMX1	TBR1	ENSPTRP00000057829	ENSPTRP00000046292	Empty spiracles homeobox 1.	T-box brain transcription factor 1.	0.690
FEZF2	CUX2	ENSPTRP00000079962	ENSPTRP00000089985	FEZ family zinc finger 2.	Homeobox protein cut-like.	0.604
FEZF2	EMX1	ENSPTRP00000079962	ENSPTRP00000057829	FEZ family zinc finger 2.	Empty spiracles homeobox 1.	0.597
FEZF2	SATB2	ENSPTRP00000079962	ENSPTRP00000080249	FEZ family zinc finger 2.	DNA-binding protein SATB.	0.655
FEZF2	TBR1	ENSPTRP00000079962	ENSPTRP00000046292	FEZ family zinc finger 2.	T-box brain transcription factor 1.	0.825
SATB2	CUX2	ENSPTRP00000080249	ENSPTRP00000089985	DNA-binding protein SATB.	Homeobox protein cut-like.	0.552
SATB2	EMX1	ENSPTRP00000080249	ENSPTRP00000057829	DNA-binding protein SATB.	Empty spiracles homeobox 1.	0.475
SATB2	FEZF2	ENSPTRP00000080249	ENSPTRP00000079962	DNA-binding protein SATB.	FEZ family zinc finger 2.	0.655
SATB2	TBR1	ENSPTRP00000080249	ENSPTRP00000046292	DNA-binding protein SATB.	T-box brain transcription factor 1.	0.805
TBR1	CUX2	ENSPTRP00000046292	ENSPTRP00000089985	T-box brain transcription factor 1.	Homeobox protein cut-like.	0.498
TBR1	EMX1	ENSPTRP00000046292	ENSPTRP00000057829	T-box brain transcription factor 1.	Empty spiracles homeobox 1.	0.690
TBR1	FEZF2	ENSPTRP00000046292	ENSPTRP00000079962	T-box brain transcription factor 1.	FEZ family zinc finger 2.	0.825
TBR1	SATB2	ENSPTRP00000046292	ENSPTRP00000080249	T-box brain transcription factor 1.	DNA-binding protein SATB.	0.805