(14 nodes) Threonine protease network (Pan troglodytes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PSMB2	Proteasome subunit beta. (201 aa)
	PSMB4	Proteasome subunit beta; Belongs to the peptidase T1B family. (264 aa)
	PSMA1	Proteasome subunit alpha type. (269 aa)
	PSMA6	Proteasome subunit alpha type. (246 aa)
	PSMA3	Proteasome subunit alpha type. (255 aa)
	PSMA4	Proteasome subunit alpha type-4 isoform X2. (261 aa)
	PSMA7	Proteasome subunit alpha type. (248 aa)
	PSMB1	Proteasome subunit beta. (241 aa)
	PSMA2	Proteasome subunit alpha type. (234 aa)
	PSMC5	Proteasome (Prosome, macropain) 26S subunit, ATPase, 5; Belongs to the AAA ATPase family. (406 aa)
	PSMB6	Proteasome subunit beta. (244 aa)
	PSMB3	Proteasome subunit beta. (205 aa)
	PSMA5	Proteasome subunit alpha type. (241 aa)
	PSMB5	Proteasome subunit beta. (263 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PSMA1	PSMA2	ENSPTRP00000005906	ENSPTRP00000048032	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.995
PSMA1	PSMA3	ENSPTRP00000005906	ENSPTRP00000010840	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA1	PSMA4	ENSPTRP00000005906	ENSPTRP00000012552	Proteasome subunit alpha type.	Proteasome subunit alpha type-4 isoform X2.	0.999
PSMA1	PSMA5	ENSPTRP00000005906	ENSPTRP00000079886	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA1	PSMA6	ENSPTRP00000005906	ENSPTRP00000010633	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA1	PSMA7	ENSPTRP00000005906	ENSPTRP00000023571	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA1	PSMB1	ENSPTRP00000005906	ENSPTRP00000032145	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA1	PSMB2	ENSPTRP00000005906	ENSPTRP00000000924	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA1	PSMB3	ENSPTRP00000005906	ENSPTRP00000069562	Proteasome subunit alpha type.	Proteasome subunit beta.	0.997
PSMA1	PSMB4	ENSPTRP00000005906	ENSPTRP00000002194	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
PSMA1	PSMB5	ENSPTRP00000005906	ENSPTRP00000088911	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA1	PSMB6	ENSPTRP00000005906	ENSPTRP00000068412	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA1	PSMC5	ENSPTRP00000005906	ENSPTRP00000056226	Proteasome subunit alpha type.	Proteasome (Prosome, macropain) 26S subunit, ATPase, 5; Belongs to the AAA ATPase family.	0.987
PSMA2	PSMA1	ENSPTRP00000048032	ENSPTRP00000005906	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.995
PSMA2	PSMA3	ENSPTRP00000048032	ENSPTRP00000010840	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
PSMA2	PSMA4	ENSPTRP00000048032	ENSPTRP00000012552	Proteasome subunit alpha type.	Proteasome subunit alpha type-4 isoform X2.	0.996
PSMA2	PSMA5	ENSPTRP00000048032	ENSPTRP00000079886	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.997
PSMA2	PSMA6	ENSPTRP00000048032	ENSPTRP00000010633	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.996
PSMA2	PSMA7	ENSPTRP00000048032	ENSPTRP00000023571	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.992
PSMA2	PSMB1	ENSPTRP00000048032	ENSPTRP00000032145	Proteasome subunit alpha type.	Proteasome subunit beta.	0.998